Brown:Journal club:Synthetic biology journal club

From 2006.igem.org

(Difference between revisions)
Jump to: navigation, search
 
(45 intermediate revisions not shown)
Line 1: Line 1:
-
{{Brown navigation bar}}
+
{{Brown navigation bar}} <br>
-
==[[Brown:Journal club/07.05.06|5 July]]==
+
=='''iGEM 2007'''==
-
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [[PDF:Repressilator|here]].
+
==11 April 2007==
 +
Deepa to present Imperial iGEM presentation
 +
[http://openwetware.org/wiki/IGEM:IMPERIAL/2006 Link to Imperial wiki]
-
==[[Brown:Journal club/06.20.06|20 June]]==
+
=='''Archive'''==
 +
==25 July==
 +
Annie to present article titled "Synthetic protein-protein interatction domains created by shuffling Cys2His2 zinc-fingers".<br>
 +
[http://www.nature.com/msb/journal/v2/n1/full/msb4100053.html Link to Article]
 +
 
 +
==18 July==
 +
 
 +
Jason to present on Article titled ''Environmentally Controlled Invasion of Cancer
 +
Cells by Engineered Bacteria''. <br>
 +
 
 +
[http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6WK7-4HJRXGD-4-3&_cdi=6899&_user=489286&_orig=search&_coverDate=01%2F27%2F2006&_qd=1&_sk=996449995&view=c&wchp=dGLbVzb-zSkWA&md5=d973cfd361022b29e92d1ccc48c28b92&ie=/sdarticle.pdf PDF of Article]
 +
 
 +
 
 +
==11 July==
 +
Brendan to present on Article titled ''Ultrasensitivity and Nosie Propagation in a Synthetic Transcriptional Cascade''. <br>
 +
 
 +
[http://www.pnas.org/cgi/reprint/102/10/3581 PDF of Article]
 +
 
 +
==5 July==
 +
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]
 +
 
 +
==20 June==
Hayato presents an article on producing the luciferace-magnetic particle complex.
Hayato presents an article on producing the luciferace-magnetic particle complex.
6pm Walter Hall
6pm Walter Hall
-
==[[Brown:Journal club/05.16.06|16th May]]==
+
==16 May==
This is the last journal club until the summer.  This week will be a meeting to discuss the lab and the first few weeks of the summer.  In Walter Hall, 80 Waterman, 6-7pm
This is the last journal club until the summer.  This week will be a meeting to discuss the lab and the first few weeks of the summer.  In Walter Hall, 80 Waterman, 6-7pm
-
==[[Brown:Journal club/5.09.06|9th May]]==
+
==9 May==
Journal Club is in Walter Hall, 80 Waterman
Journal Club is in Walter Hall, 80 Waterman
Line 19: Line 42:
Matthias Seydack
Matthias Seydack
-
 
+
==2 May==
-
==Tuesday 2nd May, 6-7pm, ==
+
-
 
+
-
==[[Brown:Journal club/5.02.06|2nd May]]==
+
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.
-
==[[Brown:Journal club/4.25.06|25th April]]==
+
==25 April==
John to present, + overview of Biobricks
John to present, + overview of Biobricks
Line 33: Line 53:
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2
-
==[[Brown:Journal club/4.18.06|18th April]]==
+
==18 April==
Kara and Jesse
Kara and Jesse
Line 43: Line 63:
Bayer TS, Smolke CD.
Bayer TS, Smolke CD.
-
==[[Brown:Journal club/4.04.06|11th April]]==
+
==11 April==
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".
Line 50: Line 70:
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).
-
 
+
==4 April==
-
==[[Brown:Journal club/4.04.06|4th April]]==
+
Brendan and Peter will be presenting the article entitled "Engineering a
Brendan and Peter will be presenting the article entitled "Engineering a
mevalonate pathway in Escherichia coli for production of terpenoids".
mevalonate pathway in Escherichia coli for production of terpenoids".
Line 61: Line 80:
<Br>
<Br>
-
==[[Brown:Journal club/3.21.06|21st March]]==
+
==21 March==
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br>
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br>
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]
-
==Archive==
 
==14th March==
==14th March==
John to give overview of last year's competition and to hand out readings
John to give overview of last year's competition and to hand out readings
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]
-
 
+
==November 29, 2006==
-
==please add future weeks==
+
Hayato will be presenting a paper on DNA autorepair. Wednesday at 5:15pm, location to be announced.<br>
 +
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17006450 Link to abstract]<br>
 +
[http://www.nature.com/nature/journal/v443/n7111/pdf/443517b.pdf Link to paper]

Latest revision as of 16:27, 10 April 2007

CSAIL logo

Home        People        Research        iGEM Proposal        Coming to Brown?        Contact        Projects              


Contents

iGEM 2007

11 April 2007

Deepa to present Imperial iGEM presentation Link to Imperial wiki

Archive

25 July

Annie to present article titled "Synthetic protein-protein interatction domains created by shuffling Cys2His2 zinc-fingers".
Link to Article

18 July

Jason to present on Article titled Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria.

PDF of Article


11 July

Brendan to present on Article titled Ultrasensitivity and Nosie Propagation in a Synthetic Transcriptional Cascade.

PDF of Article

5 July

Peter presents an article about transcriptional regulators used to form an oscillator. The article is here

20 June

Hayato presents an article on producing the luciferace-magnetic particle complex.

6pm Walter Hall

16 May

This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm

9 May

Journal Club is in Walter Hall, 80 Waterman

Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods

Matthias Seydack

2 May

Sri Kosuri from MIT to come and talk about his paper from the previous week.

25 April

John to present, + overview of Biobricks

Refactoring bacteriophage T7 Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2

18 April

Kara and Jesse

http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html

Programmable ligand-controlled riboregulators of eukaryotic gene expression.

Bayer TS, Smolke CD.

11 April

Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".

The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299

Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).

4 April

Brendan and Peter will be presenting the article entitled "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids".

Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).

It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html

21 March

Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli"

Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) Download the paper here

14th March

John to give overview of last year's competition and to hand out readings Download paper here

November 29, 2006

Hayato will be presenting a paper on DNA autorepair. Wednesday at 5:15pm, location to be announced.
Link to abstract
Link to paper

Personal tools
Past/present/future years