Brown:2006/Magnetotactic Bacteria project

From 2006.igem.org

Latest revision as of 03:42, 8 August 2006

Research Summary

First found at the bottom of a pond at Woods Hole in 1975 (Blakemore, 1975) the magnetotactic bacteria Magnetospirillum sp. AMB-1 is "easy to detect in samples collected from natural habitats without isolation and cultivation" (Moench, and Konetzka, 1978) and its genome was sequenced last year. (Matsunaga, and Okamura, et al, 2005) It was originally thought that the bacteria produce magnetite particles allowing them to align themselves with the earth's magnetic field and providing a mechanism for them to move deeper into the ground and away from high oxygen environments, but this has since been questioned (Simmons, Bazylinski, and Edwards, 2006). They are naturally found in oxic-anoxic transition zones (OATZ), which is the transition zone between water and sediment (Bazylinski, and Frankel, 2004).

Our idea

The nature of the research is to use the magnetosomes, the parts containing the magnetic particles, for protein targeting. It has previously been shown that for visualization, luciferase can be targeted to the outside of the magnetosome by genetic insertion (Matsunaga, and Togo, et al, 2000), we propose to attempt to attach other proteins to the magnetosome. These fusion proteins could then be isolated from the bacterium and used for tissue specific targeting. We intend to start this investigation by tagging the magnetosome with avidin, a glycoprotein with strong affinity to biotin (Vitamin B7) (Wilchek, and Bayer, 1988). We hope that the isolated magnetosomes can then be used as a cellular biotin reporter that could possibly be detected via magnetic resonance imaging. We plan to do this by creating a fusion protein of MagA, the gene that produces the magnetosome coating and the avidin gene, which has already been artificially synthesized. [for sequence see http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=92791046 ]

A second potential use of this technology could be to tag the magnetosome with a protein attracted to cancerous cells, the magnetosome could then be used to tag cancer cells, by heating the magnetic particles up the cancerous cells could be destroyed.

A thorough review of magnetotactic bacteria is attached and can be found here:(Bazylinski, and Frankel, 2004) http://www.nature.com/nrmicro/journal/v2/n3/full/nrmicro842_fs.html

Reference List

• Bazylinski, D.A., and Frankel, R.B. (2004). Magnetosome formation in prokaryotes. Nat. Rev. Microbiol. 2, 217-230.

• Blakemore, R. (1975). Magnetotactic bacteria. Science 190, 377-379.

• Matsunaga, T., Okamura, Y., Fukuda, Y., Wahyudi, A.T., Murase, Y., and Takeyama, H. (2005). Complete Genome Sequence of the Facultative Anaerobic Magnetotactic Bacterium Magnetospirillum sp. strain AMB-1. DNA Res. 12, 157-166.

• Matsunaga, T., Togo, H., Kikuchi, T., and Tanaka, T. (2000). Production of luciferase-magnetic particle complex by recombinant Magnetospirillum sp. AMB-1. Biotechnol. Bioeng. 70, 704-709.

• Moench, T.T., and Konetzka, W.A. (1978). A novel method for the isolation and study of a magnetotactic bacterium. Arch. Microbiol. 119, 203-212.

• Simmons, S.L., Bazylinski, D.A., and Edwards, K.J. (2006). South-seeking magnetotactic bacteria in the Northern Hemisphere. Science 311, 371-374.

• Wilchek, M., and Bayer, E.A. (1988). The avidin-biotin complex in bioanalytical applications. Anal. Biochem. 171, 1-32.