ETH2006 iptg

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Latest revision as of 12:41, 1 November 2006

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Contents 1 Chemical sensing device 1.1 Implementation alternatives 1.2 Current implementation 1.3 Modeling 1.4 Assembly procedure 1.5 Test procedure 1.6 Test results

Chemical sensing device

The chemical sensing device's PoPS output activity should be a monotonic function of the concentration of a certain substance in the cell's environment.

Implementation alternatives

1. Lactate lacI represses, IPTG induces ([http://partsregistry.org/Part:BBa_R0011 BBa_R0011] or [http://partsregistry.org/Part:BBa_R0010 BBa_R0010] )
2. Tetracycline, TetR inhibitor, Tet inducer by inhibiting TetR (or aTc, it's analog) ([http://partsregistry.org/Part:BBa_R0040 BBa_R0040])
3. combination thereof ([http://partsregistry.org/Part:BBa_I13614 BBa_I13614] / [http://partsregistry.org/Part:BBa_I13617 BBa_13617] / [http://partsregistry.org/Part:BBa_I13623 BBa_I13623] / [http://partsregistry.org/Part:BBa_I13624 BBa_I13624] / [http://partsregistry.org/Part:BBa_I13627 BBa_I13627] / [http://partsregistry.org/Part:BBa_I13637 BBa_I13637] / [http://partsregistry.org/Part:BBa_I13653 BBa_I13653])
4. simple sugar Arabinose ([http://partsregistry.org/Part:BBa_R0080 BBa_R0080])

I see the main difficulty in the spatial separation as the cells are growing in the petri dishes. Since the inducers are water-soluble we would have to fix the chemicals onto the petri dish.

Current implementation

Since most parts were already existing in the registry, we decided to use the LacI system with IPTG as chemical to be sensed.

Modeling

simulation results

Assembly procedure

Where we got it and link to their documentation

Progress:

2006/10/03

Made LB-Agar plates with antibiotics

2006/10/04

Transformed cells, plated them

2006/10/05

Found plates empty after 18h on the table, put into incubator at 37°C

2006/10/06

found lot of colonies, picked single ones and restreaked onto fresh plates

Test procedure

2006/10/07

streaked transformed bacteria on 4 different plates:

• plus IPTG, plus X-Gal
• plus IPTG, no X-Gal
• no IPTG, plus X-Gal
• no IPTG, no X-Gal

all plates contained the appropriate antibiotic (Chloramphenicol)

Test results

2006/10/08

results:

• plus IPTG, plus X-Gal: blue
• plus IPTG, no X-Gal: white
• no IPTG, plus X-Gal: light blue (system is leaky)
• no IPTG, no X-Gal: white