Penn StateProjectDes

From 2006.igem.org

Revision as of 19:06, 29 July 2005 (view source) Ricketts (Talk | contribs) (→'''Preliminary Cell Designs''') ← Older edit		Latest revision as of 17:10, 8 November 2005 (view source) Ljw140 (Talk | contribs) (→'''Cell Designs''')
(14 intermediate revisions not shown)
Line 1:		Line 1:
	== '''Bacterial Relay Race''' ==		== '''Bacterial Relay Race''' ==
-	''Pennsylvania State University''	+	''The Pennsylvania State University''
	''iGEM 2005''		''iGEM 2005''
-	==Our Idea==	+	==Conception==
-	Bacterial “Relay Race”	+	The idea for our project grew out of one for a "bacterial maze," in which bacteria would use logic to make their way through a microfabricated labrynth. This seemed slightly too difficult, so we linearized the the concept and added transfer of a signal; the idea was then dubbed a "bacterial relay race."
-	-> 1. A motile bacteria ''[B1]'' moves along a microchannel producing a diffusible	+
-	quorum signal	+
-	-> 2. When it encounters a second immotile bacteria ''[B2]'', the quorum signal	+	As in a conventional relay race, the signal is to "go," or induce motility of a latter stage participant. This is accomplished by passing a baton.  In our case, the participants are E. coli, and the baton is a quorum sensing molecule, 3OC6HSL (we have another strategy that utilizes conjugation rather than quorum sensing to mediate the signal).
-	turns on a switch controlling the latter’s motility	+
-	-> 3. Concurrently switching off its own motility, ''[B1]''.	+	In addition to passing the signal, though, the first participant must stop. We explored this option, but settled instead on terminating the first participant.  In our design we really do kill the messanger.
-	== '''Preliminary Cell Designs''' ==	+	The second leg of the race must remember to keep running; this is easy because they are gripping a baton.  Our HSL baton, however, degrades over time.  Thus, it is important to for the second cell to retain memory of the signal event.  We incorperate this feature into our design by introducing a switch, which, barring sufficient stochastic fluxuations, should remain in the off state until prompted into the on state by the signal.
-	[[Image:PennStateCell1.JPG|800px]]	+
-	[[Image:PennStateCell2.JPG|800px]]	+	Under control of the switch is a GFP reporter and MotB, the latter a protein linking the torque machinery of the flagellum to the cell wall.  By placing our system in a motility-comprimised strain (i.e. MotB K/O) and complementing it with the functional copy of the MotB listed above, we are able to induce motility.
		+
		+
		+	How to Engineer it?
		+
		+	[[Image:Strategies.jpg|thumb|left|250px|caption.]]
		+
		+
		+
		+	Parts assembled:
		+
		+	R0062+E0240
		+
		+	R0062+P0112
		+
		+	R0010+E0240
		+
		+	Q04510+P0112
		+
		+	Q04510+E0240
		+
		+	R0010+S03271
		+
		+	R0062+P0112+R0010+E0240
		+
		+	R0010+Q04510+P0112
		+
		+	== '''Cell Designs''' ==
		+
		+
		+	[[Image:PSUcircuit.jpg]]
		+
		+	== presentation ==

---

Latest revision as of 17:10, 8 November 2005

Contents 1 Bacterial Relay Race 2 Conception 3 Cell Designs 4 presentation

Bacterial Relay Race

The Pennsylvania State University iGEM 2005

Conception

The idea for our project grew out of one for a "bacterial maze," in which bacteria would use logic to make their way through a microfabricated labrynth. This seemed slightly too difficult, so we linearized the the concept and added transfer of a signal; the idea was then dubbed a "bacterial relay race."

As in a conventional relay race, the signal is to "go," or induce motility of a latter stage participant. This is accomplished by passing a baton. In our case, the participants are E. coli, and the baton is a quorum sensing molecule, 3OC6HSL (we have another strategy that utilizes conjugation rather than quorum sensing to mediate the signal).

In addition to passing the signal, though, the first participant must stop. We explored this option, but settled instead on terminating the first participant. In our design we really do kill the messanger.

The second leg of the race must remember to keep running; this is easy because they are gripping a baton. Our HSL baton, however, degrades over time. Thus, it is important to for the second cell to retain memory of the signal event. We incorperate this feature into our design by introducing a switch, which, barring sufficient stochastic fluxuations, should remain in the off state until prompted into the on state by the signal.

Under control of the switch is a GFP reporter and MotB, the latter a protein linking the torque machinery of the flagellum to the cell wall. By placing our system in a motility-comprimised strain (i.e. MotB K/O) and complementing it with the functional copy of the MotB listed above, we are able to induce motility.

How to Engineer it?

Parts assembled:

R0062+E0240

R0062+P0112

R0010+E0240

Q04510+P0112

Q04510+E0240

R0010+S03271

R0062+P0112+R0010+E0240

R0010+Q04510+P0112

Cell Designs

presentation