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'''<big>iGEM 2005</big> - The summer 2005 intercollegiate Genetically Engineered Machine competition.'''
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__NOTOC__
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==Participating Schools==
 
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{| width=400 align=center
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<font size=4>Note:  The [http://igem.org iGEM 2008 Wiki] can be found here!</font>
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|[[Berkeley]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Berkeley Parts]
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|[[Caltech]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Caltech Parts] [http://www.cds.caltech.edu/~murray/synbio/wiki/index.php WIKI]  
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|-           
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|[[Cambridge]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Cambridge Parts]
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|[[Davidson]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Davidson Parts]
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|-
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|[[ETH Zurich]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_ETHZ Parts]
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|[[Harvard]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Harvard Parts] [http://karma.med.harvard.edu/wiki/iGEM_2005 WIKI]
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|-
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|[http://model.mit.edu/igem/index.php?title=People MIT] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_MIT Parts] [http://model.mit.edu/igem WIKI]
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|[[Oklahoma]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Oklamhoma Parts]
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|-
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|[[Penn State]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Penn_State Parts]
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|[[Princeton]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Princeton Parts] [http://ehukai.ee.princeton.edu/wi/index.php WIKI]
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|-
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|[[Toronto]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Toronto Parts]
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|[[UCSF]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_UCSF Parts]
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|-
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|[[UT Austin]] [http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_UTAustin Parts]
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|[http://parts2.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Registry Registry Parts]
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|}
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==Events==
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<font size=1>This wiki is archived and the contents frozen. Please update your links.</font>
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*[http://parts2.mit.edu/r/parts/htdocs/iGEM2005/ttt.cgi Teacher's Workshop] - May 15-15, 2005
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**[[Parts, Devices, Systems & Engineering Theory]]
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**[[Risks and Rewards]]
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**[[Notes on Tom Knight's talk]]
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**[http://web.mit.edu/endy/www/scraps/talks/iGEM/Silver.yeast.ppt Pam Silver's yeast powerpoint]
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*Jamboree, November 5-6, 2005 (to change the name of the Jamboree, please send Drew Endy a check for $30,000,000)
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==Papers for Students to Read==
 
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===General Review Papers===
 
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*A. Malcolm Campbell. 2005. Meeting Report: Synthetic Biology Jamboree for Undergraduates. Cell Biology Education. 4: 19 - 23. (Meeting Report for 2004 Jamboree) [http://www.cellbioed.org/pdf/04-11-0047.pdf URL]
 
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*Dan Ferber. 2004. Microbes Made to Order. Science. Vol. 303: 158 - 161. (Good general overview), [http://www.sciencemag.org/cgi/content/full/303/5655/158 URL]
 
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*Jeff Hasty, David McMillen, and J. J. Collins. 2002. Engineered Gene Circuits. Nature. Vol. 420: 224 - 230. (Scholarly Review Paper), [http://www.nature.com/nature/journal/v420/n6912/abs/nature01257_fs.html URL]
 
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*Philip Ball. 2004. Starting from Scratch. Nature. Vol. 431: 624 - 626. (OK general overview), [http://www.nature.com/news/2004/041004/pf/431624a_pf.html URL]
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<table width=100% height=5px><tr><td bgcolor="#2171B8" align="center"><font color=#ffffff size=1></font></td></tr></table>
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*Editors of Nature. 2004. Futures of Artificial Life. Nature. Vol. 431: 613. (Editorial that addresses ethical considerations), [http://www.bio.davidson.edu/courses/synthetic/papers/Synthetic_Editorial.pdf URL]
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<font size=4>'''iGEM 2006''' - The international Genetically Engineered Machine competition</font>
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<br>
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''iGEM is an international arena where student teams compete to design and assemble engineered machines using advanced genetic components and technologies.''
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<font size=1>[http://2006.igem.org/About_iGEM Learn more.]</font>
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<table width=100% height=5px><tr><td bgcolor="#2171B8" align="center"><font color=#ffffff size=1></font></td></tr></table>
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===Research Papers in Synthetic Biology===
 
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*Timothy S. Gardner, Charles R. Cantor, and James J. Collins.  2000.  Construction of a genetic toggle switch in Escherichia coli.  Nature. Vol. 403.  339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory)
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<div id="menu">
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{|cellspacing="1" style="text-align:left"
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*Robert T. Batey, Sunny D. Gilbert, and Rebecca K. Montange. 2004. Structure of a Natural Guanine-responsive Riboswitch Complexed with a Metabolite Hypoxanthine. Nature. Vol. 432. 411 - 415. (Distinguishes Riboswitches from Aptamers and Antiswitches; also shows 3D structure of aptamer and ligand)
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| {{Click || image=buttonschool.gif | link=Schools_Participating_in_iGEM_2006 | width=30px | height=30px }}
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|<font size="2" color="black">'''Meet the [[Schools_Participating_in_iGEM_2006|37 teams]] participating in 2006'''</font>
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|[[image:Verticalrule.png]]
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*News Summary of Batey et al. 2004. (Batey et al., paper above)
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| {{Click || image=buttonprepare.gif | link=Resources | width=30px | height=30px }}
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|<font size="1" color="black">See [[Resources |teaching resources]] to learn about our unique methods</font>
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|[[image:Verticalrule.png]]
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*Laising Yen et al. 2004. Exogenous Controlof Mammalian Gene Expression through Modulation of RNA Self-cleavage. Nature. Vol. 431: 471 - 476. (mRNA-mediated regulation of translation)
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| {{Click || image=registry.png | link=Main_Page | width=45px | height=45px }}
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|<font size="1" color="green">'''Ready to build?''' </font><font size="1" color="black">Go to the [http://partsregistry.org Registry] for BioBrick parts and tools</font>
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|[[image:Verticalrule.png]]
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*Yina Kuang, Israel Biran, and David R. Walt. 2004. Simultaneously Monitoring Gene Expression Kinetics and Genetic Noise in Single Cells by Optical Well Arrays. Analytical Chemistry. Vol. 76: 6282 - 6286. (Analysis of two promoters)
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| {{Click || image=buttonambassador.gif | link=IGEM_Ambassador_Program | width=40px | height=40px }}
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| <font size="1" color="black">The [[IGEM_Ambassador_Program|Ambassador Program]] helps teams around the globe succeed</font>
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|[[image:Verticalrule.png]]
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*Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao.  2004. Design of artificial cell-cell communication using gene and metabolic networks.  PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal)
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| {{Click || image=dontpanic.jpg | link=help! | width=30px | height=30px }}
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|<font size="1" color="black">Give and get [[help!|help information and FAQs]] here.</font>
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*Hideki Kobayashi, Mads Kaern, Michihiro Araki, Kristy Chung, Timothy S. Gardner, Charles R. Cantor, and James J. Collins.  Programmable cells: Interfacing natural and engineered gene networks. PNAS. 101(22): 8414-8419. (Toggle switch interfaced with 1) SOS signaling pathway for DNA damage response and 2) quorum sensing signalling pathway)
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|}
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</div>
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*Sara Hooshangi, Stephan Thiberge, and Ron Weiss. 2005. Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. PNAS. 102(10): 3581–3586. (Basic Research Paper)
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[http://2006.igem.org/wiki/index.php/Jamboree https://static.igem.org/mediawiki/2006/8/8f/JamboreeSmall.png]
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| valign="top" style="padding: 0px; border: 2px solid #2171B8;"|
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[http://igem2006.com https://static.igem.org/mediawiki/2006/f/f4/IGEMAboveCommunitysmall.png]
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*Bayer, Travis S. and Christina D . Smolke. 2005. Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nature Biotechnology. 23 (3): 337 - 343. (Antiswithces that turn off or on mRNA translation, regulated by amptamer binding ligands)
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{| border="0" cellpadding="0" cellspacing="0" width="480px"; background-color: #CCCCCC; border: 2px solid #2171B8;"
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|valign="top" style="padding:0px; border: 2px solid #2171B8;" width="470px"|
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[[image:Radio-iGEM-current-events.gif|Current Events]]
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*Isaacs, Farren J. and James J. Collins. 2005. Plug-and-play with RNA. Nature Biotechnology. 23 (3): 306 -307. (Commentary on Bayer & Smolke, 2005.)
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<font size="1" color="red">>></font> Registration for iGEM 2007 is now open at [http://www.igem2007.com www.igem2007.com]
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*Visit the iGEM 2006 web site detailing results from the 2006 Jamboree and public relations information @ [http://www.igem2006.com www.igem2006.com].
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*Don't forget to mark your Favorite Parts in the Registry.  [http://partsregistry.org/Help:Favorite_Parts Here's how]
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*Check out the Jamboree 2006 [[Jamboree:Images|Image Gallery]]
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*See the latest Jamboree information [[Jamboree|here]].
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* Subhayu Basu, Yoram Gerchman, Cynthia H. Collins, Frances H. Arnold and Ron Weiss. 2005. A synthetic multicellular system for programmed pattern formation. Nature. Vol. 434:1130-1134 (Cool patterns, seeded with senders, with receivers responding to chemical gradients) [http://www.nature.com/nature/journal/v434/n7037/abs/nature03461.html URL]
 
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===Mathematical Modeling in Synthetic Biology===
 
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* Hasty J, McMillen D, Isaacs F, Collins JJ. 2001. Computational studies of gene regulatory networks: in numero molecular biology. Nat Rev Genet. 2001 Apr;2(4):268-79.
 
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* Guet, C&abreve;lin C., Elowitz, Michael B., Hsing, Weihong, Leibler, Stanislas Combinatorial Synthesis of Genetic Networks Science 2002 296: 1466-1470
 
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==Possible Fun Groups==
 
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#[[Awards Panel]]
 
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#[[Jamboree Planning]]
 
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#[[Editorial Board]]
 
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#[[Standards of Practice]]
 
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#[[iGEM 2006 Planning]]
 
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#[[Others (Publicity?)]]
 
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==Resources==
 
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#[[Blue Heron Point of Contact]]
 
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#[[Part Nicknames]]
 
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#[[Lab Protocols]]
 
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Please see [http://meta.wikipedia.org/wiki/MediaWiki_i18n documentation on customizing the interface]
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<font color=mediumblue>'''Check for [[Current Events|Past Events]]...'''
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and the [http://meta.wikipedia.org/wiki/MediaWiki_User%27s_Guide User's Guide] for usage and configuration help.
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| width="480px" valign="top" style="padding: 0px; border: 2px solid #2171B8;"|
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[[image:Radio-iGEM-News.gif |iGEM News]]
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<font size="1" color="red">>> </font> [http://www.discover.com/issues/dec-06/cover/ Jay Keasling - Scientist of the Year] <small>Discover Magazine</small>
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*[http://www.sciencedaily.com/releases/2006/11/061114193826.htm Gene Machine: Cells Engineered To Prevent Sepsis Win Synthetic Biology Competition] <small>Science Daily</small>
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*[http://science.slashdot.org/article.pl?sid=06/11/06/1913228&threshold=-1  Genetically Engineered Machines Competition] <small>Slashdot.org</small>
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*[http://www.technologyreview.com/read_article.aspx?id=17716&ch=biotech Bizarre bacterial creations] <small>Technology Review</small>
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*[http://www.boston.com/news/education/higher/articles/2006/11/05/genetic_jamboree_draws_innovators/ Genetic Jamboree draws innovators] <small>The Boston Globe</small>
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<font color=mediumblue>'''add your own [[iGEM News|iGEM News]]...'''
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|}
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==Funding==
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<font size=1>iGEM is an initiative of the MIT [http://icampus.mit.edu/ iCampus] program, which is funded by Microsoft Corp. iCampus sponsors faculty innovations in educational technology, helps incubate them through classroom use, and promotes their adoption, evaluation and continued evolution through worldwide multi-institutional cooperation.</font>
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iGEM is an initiative of the MIT [http://icampus.mit.edu/ iCampus] program, which is funded by Microsoft Corp. iCampus sponsors faculty innovations in educational technology, helps incubate them through classroom use, and promotes their adoption, evaluation and continued evolution through worldwide multi-institutional cooperation.
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<hr>
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<font size=1; color="LightSlateGray">iGEM Competition c/o 32 Vassar Street, Room 314, Cambridge, MA 02139 (617) 258 5244 | [[join_igem|Join iGEM]] | Support iGEM </font>

Latest revision as of 14:17, 3 May 2008


Note: The [http://igem.org iGEM 2008 Wiki] can be found here!

This wiki is archived and the contents frozen. Please update your links.



iGEM 2006 - The international Genetically Engineered Machine competition
iGEM is an international arena where student teams compete to design and assemble engineered machines using advanced genetic components and technologies. [http://2006.igem.org/About_iGEM Learn more.]


[http://2006.igem.org/wiki/index.php/Jamboree https://static.igem.org/mediawiki/2006/8/8f/JamboreeSmall.png]

[http://igem2006.com https://static.igem.org/mediawiki/2006/f/f4/IGEMAboveCommunitysmall.png]

Current Events

>> Registration for iGEM 2007 is now open at [http://www.igem2007.com www.igem2007.com]

  • Visit the iGEM 2006 web site detailing results from the 2006 Jamboree and public relations information @ [http://www.igem2006.com www.igem2006.com].
  • Don't forget to mark your Favorite Parts in the Registry. [http://partsregistry.org/Help:Favorite_Parts Here's how]
  • Check out the Jamboree 2006 Image Gallery
  • See the latest Jamboree information here.



Check for Past Events...

iGEM News

>> [http://www.discover.com/issues/dec-06/cover/ Jay Keasling - Scientist of the Year] Discover Magazine

  • [http://www.sciencedaily.com/releases/2006/11/061114193826.htm Gene Machine: Cells Engineered To Prevent Sepsis Win Synthetic Biology Competition] Science Daily
  • [http://science.slashdot.org/article.pl?sid=06/11/06/1913228&threshold=-1 Genetically Engineered Machines Competition] Slashdot.org
  • [http://www.technologyreview.com/read_article.aspx?id=17716&ch=biotech Bizarre bacterial creations] Technology Review
  • [http://www.boston.com/news/education/higher/articles/2006/11/05/genetic_jamboree_draws_innovators/ Genetic Jamboree draws innovators] The Boston Globe





add your own iGEM News...

iGEM is an initiative of the MIT [http://icampus.mit.edu/ iCampus] program, which is funded by Microsoft Corp. iCampus sponsors faculty innovations in educational technology, helps incubate them through classroom use, and promotes their adoption, evaluation and continued evolution through worldwide multi-institutional cooperation.

iGEM Competition c/o 32 Vassar Street, Room 314, Cambridge, MA 02139 (617) 258 5244 | Join iGEM | Support iGEM

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