ETH Sim Mod AND tRNA
From 2006.igem.org
(Difference between revisions)
| Line 6: | Line 6: | ||
simulated with these constants | simulated with these constants | ||
<pre> | <pre> | ||
| + | case '2h prot. half life' | ||
| + | % approximate (median) concentration of I1/I2/I1p/I2p | ||
| + | % used for k/K constants depending on this concentration | ||
| + | stateT7R = 250; | ||
| + | |||
| + | k.T7R = .1; % [] | ||
| + | k.tRNA = .1; % [] | ||
| + | l.T7R = 1/stateT7R; % [1/(muM*min)] depending on T7R | ||
| + | l.T7Rd = .1; % [1/min] | ||
| + | l.tRNA = .1; % [1/min] | ||
| + | d.T7R = log(2)/120; % [1/min] | ||
| + | d.T7Rd = log(2)/120; | ||
| + | d.tRNA = log(2)/(60*24*2); | ||
| + | d.mT7R = log(2)/30; | ||
| + | d.mtRNA = log(2)/30; | ||
| + | d.mOut = log(2)/30; | ||
| + | d.Out = log(2)/120; | ||
| + | |||
| + | r.Out = 0.1; % [] | ||
| + | p.Out = 0.1 * r.Out; % a*r [] | ||
| + | l.Out = 1; % [1/min] | ||
| + | K.Out = stateT7R; % muM--> depending on T7R | ||
| + | n.Out = 1; % [] | ||
</pre> | </pre> | ||
| Line 13: | Line 36: | ||
simulated with these constants | simulated with these constants | ||
<pre> | <pre> | ||
| + | otherwise %case '5h prot. half life' | ||
| + | % approximate (median) concentration of I1/I2/I1p/I2p | ||
| + | % used for k/K constants depending on this concentration | ||
| + | stateT7R = 400; | ||
| + | |||
| + | k.T7R = .1; % [] | ||
| + | k.tRNA = .1; % [] | ||
| + | l.T7R = 1/stateT7R; % [1/(muM*min)] depending on T7R | ||
| + | l.T7Rd = .1; % [1/min] | ||
| + | l.tRNA = .1; % [1/min] | ||
| + | d.T7R = log(2)/300; % [1/min] | ||
| + | d.T7Rd = log(2)/300; | ||
| + | d.tRNA = log(2)/(60*24*2); | ||
| + | d.mT7R = log(2)/30; | ||
| + | d.mtRNA = log(2)/30; | ||
| + | d.mOut = log(2)/30; | ||
| + | d.Out = log(2)/300; | ||
| + | |||
| + | r.Out = 0.1; % [] | ||
| + | p.Out = 0.1 * r.Out; % a*r [] | ||
| + | l.Out = 1; % [1/min] | ||
| + | K.Out = stateT7R; % muM--> depending on T7R | ||
| + | n.Out = 1; % [] | ||
</pre> | </pre> | ||
Revision as of 18:38, 15 September 2006
back to → ETH 2006 Main Page → Half adder idea
simulated with these constants
case '2h prot. half life'
% approximate (median) concentration of I1/I2/I1p/I2p
% used for k/K constants depending on this concentration
stateT7R = 250;
k.T7R = .1; % []
k.tRNA = .1; % []
l.T7R = 1/stateT7R; % [1/(muM*min)] depending on T7R
l.T7Rd = .1; % [1/min]
l.tRNA = .1; % [1/min]
d.T7R = log(2)/120; % [1/min]
d.T7Rd = log(2)/120;
d.tRNA = log(2)/(60*24*2);
d.mT7R = log(2)/30;
d.mtRNA = log(2)/30;
d.mOut = log(2)/30;
d.Out = log(2)/120;
r.Out = 0.1; % []
p.Out = 0.1 * r.Out; % a*r []
l.Out = 1; % [1/min]
K.Out = stateT7R; % muM--> depending on T7R
n.Out = 1; % []
simulated with these constants
otherwise %case '5h prot. half life'
% approximate (median) concentration of I1/I2/I1p/I2p
% used for k/K constants depending on this concentration
stateT7R = 400;
k.T7R = .1; % []
k.tRNA = .1; % []
l.T7R = 1/stateT7R; % [1/(muM*min)] depending on T7R
l.T7Rd = .1; % [1/min]
l.tRNA = .1; % [1/min]
d.T7R = log(2)/300; % [1/min]
d.T7Rd = log(2)/300;
d.tRNA = log(2)/(60*24*2);
d.mT7R = log(2)/30;
d.mtRNA = log(2)/30;
d.mOut = log(2)/30;
d.Out = log(2)/300;
r.Out = 0.1; % []
p.Out = 0.1 * r.Out; % a*r []
l.Out = 1; % [1/min]
K.Out = stateT7R; % muM--> depending on T7R
n.Out = 1; % []
