Davidson 2006

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• [mailto:laheyer@davidson.edu| Laurie J. Heyer] [http://www.davidson.edu/math/heyer/ Department of Mathematics]
• [mailto:laheyer@davidson.edu| Laurie J. Heyer] [http://www.davidson.edu/math/heyer/ Department of Mathematics]
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== <font face="chalkboard"><font color='lime'>Papers of Interest</font color> ==
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== <font face="chalkboard"><font color='lime'>[[Papers of Interest]]</font color> ==
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• [http://www.bio.davidson.edu/courses/synthetic/papers/Sanders_04.pdf Stepwise Dissection of the Hin-catalyzed Recombination Reaction from Synapsis to Resolution. Erin R. Sanders and Reid C. Johnson]
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• [http://www.molcells.org/home/journal/article_read.asp?volume=16&number=3&startpage=377 The Effects of Ethidium Bromide and Mg++ Ion on Strand Exchange in the Hin-mediated Inversion Reaction. Hee Jung Lee et al.] Excellent description of Hin recombination mechanism.
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• '[http://www.jbc.org/cgi/reprint/267/16/11183 The Effects of Symmetrical Recombination Site hixC on Hin Recombinase Function. Heon Man Lim et al.]
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• [http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=3457367 The role of the loxP spacer region in P1 site-specific recombination. Ronald H.Hoess et al.]
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• [http://www.biomedcentral.com/1471-2164/7/73 A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination. Perseus I Missirlis et al.]
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• [http://nar.oxfordjournals.org/cgi/content/full/30/13/2764 Non-contact positions impose site selectivity on Cre recombinase. Andreas W. Rufer and Brian Sauer]
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• '[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=103771 Growth Phase-Dependent Variation in Protein Composition of the Escherichia coli Nucleoid]
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• [http://www.jbc.org/cgi/content/full/272/29/18434 Hin-mediated Inversion on Positively Supercoiled DNA]
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• [http://jb.asm.org/cgi/content/full/185/3/1097 Plasmid DNA Supercoiling and Gyrase Activity in Escherichia coli Wild-Type and rpoS Stationary-Phase Cells]
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•[[Media:Enhancer_Sequence_Paper.pdf| PERKINS-BALDING D, DIAS D, and GLASGOW A:Location, Degree, and Direction of DNA Bending Associated
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with the Hin Recombinational Enhancer Sequence and
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Fis-Enhancer Complex ]]
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==<font face="chalkboard"><font color='orange'>Parts Created</font color></font face>==
==<font face="chalkboard"><font color='orange'>Parts Created</font color></font face>==

Revision as of 16:15, 31 July 2006

Logo.gif


[http://www.bio.davidson.edu/courses/synthetic/photos/FlapJack_HotCakes.html Official Team Photo (rollover image)]

DC team.JPG E hop.jpg

Malcolm, Laurie, Sabriya, Erin, Lance
Logo Mascotlogo


Contents

Assembly Plan

Western Assembly Plan

Davidson Assembly Plan

Students

• Sabriya Rosemond is a rising junior biology major at Hampton University.

• Erin Zwack is a rising junior biology major at Davidson College.

• Lance Harden is a rising sophomore at Davidson College who will probably major in math.

Faculty

• A. Malcolm Campbell [http://www.bio.davidson.edu/campbell Department of Biology]

• Laurie J. Heyer [http://www.davidson.edu/math/heyer/ Department of Mathematics]

Papers of Interest

Parts Created

Pancake Parts

Questions

Assembly Issues

Current Course of Action

Plasmids and Bacteria     Hix and RE    Hin and Antibiotic Pancakes    Things That we Have Done

Pancake Simulators aka The Lancelator

MATLAB Code

[http://gcat.davidson.edu/IGEM06/randompancakeflipper.m User-Friendly Version]
[http://gcat.davidson.edu/IGEM06/powerflipper.m Power-User Version]
[http://gcat.davidson.edu/IGEM06/powerflipperplus.m Power-User Update]
[http://gcat.davidson.edu/IGEM06/findmin.m Findmin]
[http://gcat.davidson.edu/IGEM06/bigtrial.m Bigtrial]
[http://gcat.davidson.edu/IGEM06/pancakeplotter.m Pancakeplotter]
[http://gcat.davidson.edu/IGEM06/permplotter.m Permplotter]
[http://gcat.davidson.edu/IGEM06/bioperms.m Bioperms]
[http://gcat.davidson.edu/IGEM06/signedperms.m Signedperms]
[http://gcat.davidson.edu/IGEM06/adjmat.m Adjmat]
[http://gcat.davidson.edu/IGEM06/make_radial.m Make_radial]
[http://gcat.davidson.edu/IGEM06/find_diam.m Find_diam]

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