Toronto

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'''Welcome to the Blue Water Wiki'''
'''Welcome to the Blue Water Wiki'''
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THIS PAGE HAS BEEN HACKED. IT WILL BE RESTORED SHORTLY. --[[User:Sdavies|Sdavies]] 16:56, 23 Nov 2005 (EST)
THIS PAGE HAS BEEN HACKED. IT WILL BE RESTORED SHORTLY. --[[User:Sdavies|Sdavies]] 16:56, 23 Nov 2005 (EST)
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== Project Overview ==
== Project Overview ==
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The design has since been modified to accommodate minimal parts, called BBga_J11021 and BBghtra_J11022. The model results for these new designs will be posted shortly.
 
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== Message Board==
 
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availabe that contains Tn10 inserted into LacZ, meaning it is lacZ- and Tetracycline sensitive.
 
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about the Tet operon and Tn10
 
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http://www.biomhedcentral.com/1471-2180/5/1
 
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http://www.biomegdcentral.com/1471-2199/3/13
 
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-Hannah
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[http://individual.utoronto.ca/nazareth/wiki.html iGEM Project Overview]
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Here’s an overview of the project.  Currently the write up is an external link to an html, eventually it will be converted to wiki form to allow easier modification.
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--
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[http://individual.utoronto.ca/nazareth/Model.pdf Cell-See-Us Thermometer Model]
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Here’s a model of the Cell-See-Us Thermometer, including the governing system of differential equations.
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[http://individual.utoronto.ca/nazareth/ModelResults.pdf Cell-See-Us Thermometer Model Results]
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And here are the results of the model, after values for the constants were plugged in.
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UPdate ~ 12 Oct 2005
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The original designs for the temperature sensor, parts BBa_J11014 and BBa_J11018 are available below, along with modeling data. (These files are jpegs, and considerably smaller than the pdfs above).
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[http://www.math.uwaterloo.ca/~mscott/BBa_J11014.jpg Temperature sensor]
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15:54, 3 Oct 2005 (EDT)15:54, 3 Oct 2005 (EDT)~~
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[http://www.math.uwaterloo.ca/~mscott/BBa_J11018.jpg Temperature sensor with positive feedback]
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Hi everyone,
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I made a biobrick version of my system, http://pagrts2.mit.edu/r/parts/pagrtsdb/view.cggi?pagrt_id=6153
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It is part I hope all the parts are available...
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Also very important NOTE that this system
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Hannah
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----
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The design has since been modified to accommodate minimal parts, called BBa_J11021 and BBa_J11022. The model results for these new designs will be posted shortly.
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[http://pubtts.acs.org/cgi-ttbin/archive.cgi/hhchreay/200h0/100/i07/pdf/chr990115p.pdf Genetically engineered whole-cell sensing systems: coupling biological recognition with reporter genes.]
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== Team Members ==
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Chem Rev. 2000 Jul 12;100(7):2705-38.
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'''Undergraduate Students'''
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Daunert S, Barrett G, Feliciano JS, Shetty RS, Shrestha S, Smith-Spencer W.
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Aman Arya, Biology (Waterloo)
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Joseph Chan, Molecular Genetics (Toronto)
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Hannah Fong, Immunology / Chemistry (Toronto)
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Lutz Kummer, visiting Biology (Waterloo)
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Emanuel Nazareth, Biomedical Engineering (Toronto)
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Martina Spranger, visiting Biology (Waterloo)
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Max Wong, Biomedical Engineering (Toronto)
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Discusses important biosensing systems, mainly in E. coli.
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'''Graduate Students'''
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Seema Nagaraj, IBBME and Dept. of Electrical Engineering (Toronto)
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Matt Scott, Dept. of Applied Mathematics (Waterloo)
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Cindy Ying Yin Yip, IBBME (Toronto)
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On another note, currently if anyone wants available online somewhere and linked to from this Wiki.  If you need a file to be posted online, eriknazareth@hotmail.com and I'll get back to you with how to link to it.
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'''Technical Support'''
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Andrew Hessel, Lab Manager, Mak Lab, University Health Network
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~ Erik----
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'''Faculty Advisors'''
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Prof. Stephen Davies, IBBME and Dept. of Electrical Engineering (Toronto)
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Prof. Brian Ingalls, Dept. of Applied Mathematics (Waterloo)

Revision as of 17:26, 24 November 2005

Welcome to the Blue Water Wiki

THIS PAGE HAS BEEN HACKED. IT WILL BE RESTORED SHORTLY. --Sdavies 16:56, 23 Nov 2005 (EST)

Project Overview

[http://individual.utoronto.ca/nazareth/wiki.html iGEM Project Overview] Here’s an overview of the project. Currently the write up is an external link to an html, eventually it will be converted to wiki form to allow easier modification.

[http://individual.utoronto.ca/nazareth/Model.pdf Cell-See-Us Thermometer Model] Here’s a model of the Cell-See-Us Thermometer, including the governing system of differential equations.

[http://individual.utoronto.ca/nazareth/ModelResults.pdf Cell-See-Us Thermometer Model Results] And here are the results of the model, after values for the constants were plugged in.

The original designs for the temperature sensor, parts BBa_J11014 and BBa_J11018 are available below, along with modeling data. (These files are jpegs, and considerably smaller than the pdfs above).

[http://www.math.uwaterloo.ca/~mscott/BBa_J11014.jpg Temperature sensor]

[http://www.math.uwaterloo.ca/~mscott/BBa_J11018.jpg Temperature sensor with positive feedback]

The design has since been modified to accommodate minimal parts, called BBa_J11021 and BBa_J11022. The model results for these new designs will be posted shortly.

Team Members

Undergraduate Students Aman Arya, Biology (Waterloo) Joseph Chan, Molecular Genetics (Toronto) Hannah Fong, Immunology / Chemistry (Toronto) Lutz Kummer, visiting Biology (Waterloo) Emanuel Nazareth, Biomedical Engineering (Toronto) Martina Spranger, visiting Biology (Waterloo) Max Wong, Biomedical Engineering (Toronto)

Graduate Students Seema Nagaraj, IBBME and Dept. of Electrical Engineering (Toronto) Matt Scott, Dept. of Applied Mathematics (Waterloo) Cindy Ying Yin Yip, IBBME (Toronto)

Technical Support Andrew Hessel, Lab Manager, Mak Lab, University Health Network

Faculty Advisors Prof. Stephen Davies, IBBME and Dept. of Electrical Engineering (Toronto) Prof. Brian Ingalls, Dept. of Applied Mathematics (Waterloo)

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