Davidson 2006

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[http://www.bio.davidson.edu/courses/synthetic/photos/FlapJack_HotCakes.html Official Team Photo (rollover image)]

DC team.JPG E hop.jpg

Malcolm, Laurie, Sabriya, Erin, Lance
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Contents

Project

Who: The Mammoths, and FlapJack and the Pancakes

What: Our goal is to solve the Pancake problem[http://www.cut-the-knot.org/SimpleGames/Flipper.shtml] in a biological system.

When: Summer and Fall '06

Where: Missouri Western State University and Davidson College

Why: Because we love breakfast... well most of us.

How: Trying to invert antibiotic resistance genes using an inversion method found in Salmonella typhimurium.

Assembly Plan

Western Assembly Plan

Davidson Assembly Plan

Students

  • Erin Zwack is a rising junior biology major at Davidson College.
  • Lance Harden is a rising sophomore at Davidson College who will probably major in math.
  • Samantha Simpson is a rising sophomore at Davidson College who might design a major in genomics.

Faculty

  • Laurie J. Heyer [http://www.davidson.edu/math/heyer/ Department of Mathematics]
  • Karmella Haynes [http://www.bio.davidson.edu/ Department of Biology - teaching postdoc and visiting assistant professor]

Papers of Interest

Parts Created

Pancake Parts

Questions

Assembly Issues

Current Course of Action

Plasmids and Bacteria     Hix and RE    Hin and Antibiotic Pancakes    Things That we Have Done

Pancake Simulators aka The Lancelator

MATLAB Code

[http://gcat.davidson.edu/IGEM06/randompancakeflipper.m User-Friendly Version]
[http://gcat.davidson.edu/IGEM06/powerflipper.m Power-User Version]
[http://gcat.davidson.edu/IGEM06/powerflipperplus.m Power-User Update]
[http://gcat.davidson.edu/IGEM06/findmin.m Findmin]
[http://gcat.davidson.edu/IGEM06/bigtrial.m Bigtrial]
[http://gcat.davidson.edu/IGEM06/pancakeplotter.m Pancakeplotter]
[http://gcat.davidson.edu/IGEM06/permplotter.m Permplotter]
[http://gcat.davidson.edu/IGEM06/bioperms.m Bioperms]
[http://gcat.davidson.edu/IGEM06/signedperms.m Signedperms]
[http://gcat.davidson.edu/IGEM06/adjmat.m Adjmat]
[http://gcat.davidson.edu/IGEM06/make_radial.m Make_radial]
[http://gcat.davidson.edu/IGEM06/find_diam.m Find_diam]

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