http://2006.igem.org/wiki/index.php?title=Special:Contributions/JamieLemon&feed=atom&limit=50&target=JamieLemon&year=&month=2006.igem.org - User contributions [en]2024-03-29T07:06:30ZFrom 2006.igem.orgMediaWiki 1.16.5http://2006.igem.org/wiki/index.php/Brown:ProjectsBrown:Projects2006-07-07T14:42:15Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
== Bacterial Freeze Tag ==<br />
<br />
==[[Overview]]==<br />
<br />
==[[Sender Cell]]==<br />
<br />
==[[AHL Sensor]]==<br />
<br />
==[['Freeze Machine']]==<br />
<br />
==[[Unfreeze Mechanism]]==<br />
<br />
== Magnetotactic Bacteria ==<br />
<br />
'''Avadin-Biotin Complex'''<br />
<br />
To create magnetosomes covered in Avadin. The basic idea is to create a fusion protein from MagA and Avadin, then isolate the magnetic particles, which will now be coated in avadin. Avadin forms one of the strongest bindings known with the molecule biotin.<br />
<br />
Bayer, E. A. and Wilchek, M. (1978). The avidin-biotin complex as a tool in molecular biology. Trends Biochem. Sci. 3, N237-N239.<br />
<br />
<br />
http://www.weizmann.ac.il/Biological_Chemistry/scientist/Bayer/BayerAvidin.html great review<br />
<br />
http://www.avidity.com/apps.html current applications of tagging biotin<br />
<br />
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=92791044<br />
Artifical synthesized Gene coding for avidin</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:iGEM_portal_2006Brown:iGEM portal 20062006-07-07T14:39:58Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
<br />
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0; width: 750px; color: #000000; background-color: #ffffff;"<br />
| width=717px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<h3>Welcome</h3><br />
Welcome to the Brown [http://icampus.mit.edu/projects/iGem.shtml International Genetically Engineered Machine (iGEM)] Team Wiki. Our goal is to participate in the iGEM Competition for the summer of 2006. Feel free to explore our website or [[Brown:Contact | contact us]], we are constantly updating it with the latest developments in the project. <br />
<br />
<h3>Team news </h3><br />
6/18/06 - Funded students - remember you need to add [[User:Johncumbers| a weekly report]] to your user page <br><br />
6/18/06 - Updated [[Brown:Calendar pages |calendar page]], now all info on single page <br><br />
4/22/06 - Please pick up some tasks from the new [[Brown:Todo list | To do list]] <br><br />
3/29/06 - Updated [[Brown:Roles/future planning| Future planning]] section <br><br />
3/29/06 - Please make sure you have signed yourself up for the [[Brown:Journal club:Synthetic biology journal club |journal club]] <br><br />
3/29/06 - If you are in charge of one of the roles listed below, please update your section with your ideas and plans<br />
<br />
|}<br />
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 750px; color: #000000; background-color: #ffffff;"<br />
|-valign="top"<br />
|width=179.25px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<br />
<h3>Team roles</h3><br />
<br />
Team Leaders: [[user:jamielemon|Jamie L.]], [[user:anniegao|Annie]]<br><br />
Fundraising: <br><br />
Secretary: [[user:Victorialattanzi|Victoria]]<br><br />
Journal Club Coordinator: [[user:petergoldstein|Peter]] <br><br />
Faculty Liason: [[user:azeemkaka| Azeem]]<br><br />
Industry Liason: <br> <br />
Outreach: <br> <br />
[[Brown:Roles/future planning| Future planning]]: [[user:johncumbers|John]] <br> <br />
Chemical DB Manager: [[user:petergoldstein|Peter]] <br><br />
Guest Speaker Organizer: [[user:johncumbers|John]] <br><br />
|width=179.25px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<br />
<h3>[[Brown:Todo list |Todo list]]</h3><br />
<h3>[[Brown:Lab Protocols| Lab Protocols]] </h3><br />
<h3>[[Brown:Next Meeting Agenda |Next Meeting Agenda ]]</h3><br />
<br />
<h3>[[Brown:Weekly Meetings|Weekly Meetings]]</h3><br />
<br />
<h3>[[Brown:Equipment needed|Equipment needed]]</h3><br />
<br />
<h3>[[Brown:Summer workshops|Summer Workshops]]</h3><br />
<br />
<h3>[[Brown:Calendar pages|Calendar Pages]]</h3><br />
<br />
<h3>[[Brown:Projects|Projects]]</h3><br />
<br />
<h3>[[Brown:Journal_club:Synthetic_biology_journal_club|Journal Club]]</h3><br />
<br />
|width=179.25px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<br />
<h3>About Us</h3><br />
#[[Brown:Lab Members | Faculty Advisors]]<br />
#[[Brown:Lab Members | Team Members]]<br />
#[[Brown:Industry Affiliates | Industry Affiliates]]<br />
#[[Brown:March142006 | Meeting minutes]]<br />
<br />
Our lab is in J Walter Wilson, Rm 228, call 401 523 8190<br />
<br />
__NOTOC__</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:iGEM_portal_2006Brown:iGEM portal 20062006-07-07T14:38:42Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
<br />
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0; width: 750px; color: #000000; background-color: #ffffff;"<br />
| width=717px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<h3>Welcome</h3><br />
Welcome to the Brown [http://icampus.mit.edu/projects/iGem.shtml International Genetically Engineered Machine (iGEM)] Team Wiki. Our goal is to participate in the iGEM Competition for the summer of 2006. Feel free to explore our website or [[Brown:Contact | contact us]], we are constantly updating it with the latest developments in the project. <br />
<br />
<h3>Team news </h3><br />
6/18/06 - Funded students - remember you need to add [[User:Johncumbers| a weekly report]] to your user page <br><br />
6/18/06 - Updated [[Brown:Calendar pages |calendar page]], now all info on single page <br><br />
4/22/06 - Please pick up some tasks from the new [[Brown:Todo list | To do list]] <br><br />
3/29/06 - Updated [[Brown:Roles/future planning| Future planning]] section <br><br />
3/29/06 - Please make sure you have signed yourself up for the [[Brown:Journal club:Synthetic biology journal club |journal club]] <br><br />
3/29/06 - If you are in charge of one of the roles listed below, please update your section with your ideas and plans<br />
<br />
|}<br />
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 750px; color: #000000; background-color: #ffffff;"<br />
|-valign="top"<br />
|width=179.25px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<br />
<h3>Team roles</h3><br />
<br />
Team Leaders: [[user:jamielemon|Jamie L.]], [[user:anniegao|Annie]]<br><br />
Fundraising: <br><br />
Secretary: [[user:Victorialattanzi|Victoria]]<br><br />
Journal Club Coordinator: [[user:petergoldstein|Peter]] <br><br />
Faculty Liason: [[user:azeemkaka| Azeem]]<br><br />
Industry Liason: <br> <br />
Outreach: <br> <br />
[[Brown:Roles/future planning| Future planning]]: [[user:johncumbers|John]] <br> <br />
Chemical DB Manager: [[user:petergoldstein|Peter]] <br><br />
Guest Speaker Organizer: [[user:johncumbers|John]] <br><br />
|width=179.25px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<br />
<h3>[[Brown:Todo list |Todo list]]</h3><br />
<h3>[[Brown:Lab Protocols| Lab Protocols]] </h3><br />
<h3>[[Brown:Next Meeting Agenda |Next Meeting Agenda ]]</h3><br />
<br />
<h3>[[Brown:Weekly Meetings|Weekly Meetings]]</h3><br />
<br />
<h3>[[Brown:Equipment needed|Equipment needed]]</h3><br />
<br />
<h3>[[Brown:Summer workshops|Summer Workshops]]</h3><br />
<br />
<h3>[[Brown:Calendar pages|Calendar Pages]]</h3><br />
<br />
<h3>[[Brown:Projects|Projects]]</h3><br />
<br />
<h3>Research</h3><br />
#[[Brown:Journal_club:Synthetic_biology_journal_club|Journal Club]]<br />
#[http://www.cumbers.com/igem Idea factory] <br><br />
<br />
|width=179.25px style="padding: 5px; background-color: #ffffff; border: 2px solid #993300;" |<br />
<br />
<h3>About Us</h3><br />
#[[Brown:Lab Members | Faculty Advisors]]<br />
#[[Brown:Lab Members | Team Members]]<br />
#[[Brown:Industry Affiliates | Industry Affiliates]]<br />
#[[Brown:March142006 | Meeting minutes]]<br />
<br />
Our lab is in J Walter Wilson, Rm 228, call 401 523 8190<br />
<br />
__NOTOC__</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:ProjectsBrown:Projects2006-07-07T14:33:43Z<p>JamieLemon: /* Bacterial Freeze Tag */</p>
<hr />
<div>[[Brown:iGEM portal 2006 |Home]]<br />
== Bacterial Freeze Tag ==<br />
<br />
==[[Overview]]==<br />
<br />
==[[Sender Cell]]==<br />
<br />
==[[AHL Sensor]]==<br />
<br />
==[['Freeze Machine']]==<br />
<br />
==[[Unfreeze Mechanism]]==<br />
<br />
== Magnetotactic Bacteria ==<br />
<br />
'''Avadin-Biotin Complex'''<br />
<br />
To create magnetosomes covered in Avadin. The basic idea is to create a fusion protein from MagA and Avadin, then isolate the magnetic particles, which will now be coated in avadin. Avadin forms one of the strongest bindings known with the molecule biotin.<br />
<br />
Bayer, E. A. and Wilchek, M. (1978). The avidin-biotin complex as a tool in molecular biology. Trends Biochem. Sci. 3, N237-N239.<br />
<br />
<br />
http://www.weizmann.ac.il/Biological_Chemistry/scientist/Bayer/BayerAvidin.html great review<br />
<br />
http://www.avidity.com/apps.html current applications of tagging biotin<br />
<br />
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=92791044<br />
Artifical synthesized Gene coding for avidin</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:27:23Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}} <br><br />
==18 July==<br />
Jason to present. More info soon.<br />
<br />
==11 July==<br />
Brendan to present. More info soon.<br />
<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:25:32Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}} <br><br />
==[[Brown:Journal club/07.18.06|18 July]]==<br />
Jason to present. More info soon.<br />
<br />
==[[Brown:Journal club/07.11.06|11 July]]==<br />
Brendan to present. More info soon.<br />
<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:23:50Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}} <br><br />
==[[Brown:Journal club/07.11.06|11 July]]==<br />
Brendan to present. More info soon.<br />
<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:20:34Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:20:06Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:19:49Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:17:05Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:16:35Z<p>JamieLemon: /* Archive */</p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==Archive==<br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:15:09Z<p>JamieLemon: /* 21st March */</p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==[[Brown:Journal club/3.21.06|Archive]]==<br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:12:54Z<p>JamieLemon: /* 21st March */</p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:12:27Z<p>JamieLemon: /* Archive */</p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==Archive==<br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:10:13Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
<br />
==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
<br />
Matthias Seydack<br />
<br />
<br />
==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
<br />
==[[Brown:Journal club/4.25.06|25th April]]==<br />
<br />
John to present, + overview of Biobricks<br />
<br />
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
<br />
==[[Brown:Journal club/4.18.06|18th April]]==<br />
<br />
Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
<br />
Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==Archive==<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:Journal_club:Synthetic_biology_journal_clubBrown:Journal club:Synthetic biology journal club2006-07-07T14:09:13Z<p>JamieLemon: /* Tuesday 2nd May, 6-7pm, */</p>
<hr />
<div>{{Brown navigation bar}}<br />
==[[Brown:Journal club/07.05.06|5 July]]==<br />
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]<br />
<br />
==[[Brown:Journal club/06.20.06|20 June]]==<br />
Hayato presents an article on producing the luciferace-magnetic particle complex.<br />
<br />
6pm Walter Hall<br />
<br />
==[[Brown:Journal club/05.16.06|16th May]]==<br />
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm<br />
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==[[Brown:Journal club/5.09.06|9th May]]==<br />
<br />
Journal Club is in Walter Hall, 80 Waterman<br />
<br />
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods<br />
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Matthias Seydack<br />
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==Tuesday 2nd May, 6-7pm, ==<br />
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==[[Brown:Journal club/5.02.06|2nd May]]==<br />
<br />
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.<br />
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==[[Brown:Journal club/4.25.06|25th April]]==<br />
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John to present, + overview of Biobricks<br />
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[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]<br />
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2<br />
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==[[Brown:Journal club/4.18.06|18th April]]==<br />
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Kara and Jesse<br />
<br />
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html<br />
<br />
Programmable ligand-controlled riboregulators of eukaryotic gene expression.<br />
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Bayer TS, Smolke CD.<br />
<br />
==[[Brown:Journal club/4.04.06|11th April]]==<br />
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".<br />
<br />
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299<br />
<br />
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).<br />
<br />
<br />
==[[Brown:Journal club/4.04.06|4th April]]==<br />
Brendan and Peter will be presenting the article entitled "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids".<br />
<br />
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a<br />
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).<br />
<br />
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html<br />
<Br><br />
<br />
==[[Brown:Journal club/3.21.06|21st March]]==<br />
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br><br />
<br />
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]<br />
<br />
==Archive==<br />
==14th March==<br />
John to give overview of last year's competition and to hand out readings<br />
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]<br />
<br />
<br />
==please add future weeks==</div>JamieLemonhttp://2006.igem.org/wiki/index.php/Brown:iGEM_portal_2006Brown:iGEM portal 20062006-07-07T14:00:10Z<p>JamieLemon: </p>
<hr />
<div>{{Brown navigation bar}}<br />
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<h3>Welcome</h3><br />
Welcome to the Brown [http://icampus.mit.edu/projects/iGem.shtml International Genetically Engineered Machine (iGEM)] Team Wiki. Our goal is to participate in the iGEM Competition for the summer of 2006. Feel free to explore our website or [[Brown:Contact | contact us]], we are constantly updating it with the latest developments in the project. <br />
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<h3>Team news </h3><br />
6/18/06 - Funded students - remember you need to add [[User:Johncumbers| a weekly report]] to your user page <br><br />
6/18/06 - Updated [[Brown:Calendar pages |calendar page]], now all info on single page <br><br />
4/22/06 - Please pick up some tasks from the new [[Brown:Todo list | To do list]] <br><br />
3/29/06 - Updated [[Brown:Roles/future planning| Future planning]] section <br><br />
3/29/06 - Please make sure you have signed yourself up for the [[Brown:Journal club:Synthetic biology journal club |journal club]] <br><br />
3/29/06 - If you are in charge of one of the roles listed below, please update your section with your ideas and plans<br />
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<h3>Team roles</h3><br />
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Team Leaders: [[user:jamielemon|Jamie L.]], [[user:anniegao|Annie]]<br><br />
Fundraising: <br><br />
Secretary: <br><br />
Journal Club Coordinator: [[user:petergoldstein|Peter]] <br><br />
Faculty Liason: [[user:azeemkaka| Azeem]]<br><br />
Industry Liason: <br> <br />
Outreach: <br> <br />
[[Brown:Roles/future planning| Future planning]]: [[user:johncumbers|John]] <br> <br />
Chemical DB Manager: [[user:petergoldstein|Peter]] <br><br />
Guest Speaker Organizer: [[user:johncumbers|John]] <br><br />
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<br />
<h3>[[Brown:Todo list |Todo list]]</h3><br />
<h3>[[Brown:Lab Protocols| Lab Protocols]] </h3><br />
<h3>[[Brown:Next Meeting Agenda |Next Meeting Agenda ]]</h3><br />
<br />
<h3>[[Brown:Equipment needed|Equipment needed]]</h3><br />
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<h3>[[Brown:Summer workshops|Summer Workshops]]</h3><br />
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<h3>[[Brown:Calendar pages|Calendar Pages]]</h3><br />
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<h3>[[Brown:Projects |Projects]]</h3><br />
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<h3>Research</h3><br />
#[[Brown:Journal_club:Synthetic_biology_journal_club|Journal Club]]<br />
#[http://www.cumbers.com/igem Idea factory] <br><br />
#[[Brown:Protocols|Protocols]]<br />
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<br />
<h3>About Us</h3><br />
#[[Brown:Lab Members | Faculty Advisors]]<br />
#[[Brown:Lab Members | Team Members]]<br />
#[[Brown:Industry Affiliates | Industry Affiliates]]<br />
#[[Brown:March142006 | Meeting minutes]]<br />
<br />
Our lab is in J Walter Wilson, Rm 228, call 401 523 8190<br />
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__NOTOC__</div>JamieLemon