Useful Reading

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Spatiotemporal control of gene expression with pulse-generating networks.
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*''Spatiotemporal control of gene expression with pulse-generating networks.''
Basu S, Mehreja R, Thiberge S, Chen MT, Weiss R. ''Proc Natl Acad Sci U S A''. 2004 Apr 27;'''101'''(17):6355-60. [http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=15096621 Link]
Basu S, Mehreja R, Thiberge S, Chen MT, Weiss R. ''Proc Natl Acad Sci U S A''. 2004 Apr 27;'''101'''(17):6355-60. [http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=15096621 Link]
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Production of the antimalarial drug precursor artemisinic acid in engineered yeast.
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*''Production of the antimalarial drug precursor artemisinic acid in engineered yeast.''
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Dae-Kyun Ro et al.  ''Nature''. 2006 Apr 13; '''440'''(7086):940-943.[http://www.nature.com/nature/journal/v440/n7086/full/nature04640.html]
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Dae-Kyun Ro et al.  ''Nature''. 2006 Apr 13; '''440'''(7086): 940-943.[http://www.nature.com/nature/journal/v440/n7086/full/nature04640.html Link]
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*''Synthetic biology: new engineering rules for an emerging discipline.''
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Andrianantoandro E, Basu S, Karig DK, Weiss R. ''Mol Syst Biol.'' Epub 2006 May 16.[http://www.nature.com/msb/journal/v2/n1/full/msb4100073.html Link]
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*''Taking pictures with E. coli: signal processing using synthetic biology.''
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Levy M, Tabor JJ, Wong STC. ''IEEE Signal Processing Magazine'' 2006 May; '''23'''(3): 140-142  [http://ieeexplore.ieee.org/iel5/79/34166/01628897.pdf? Link]
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*''Teaching bacteria a new language.''
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Gerchman Y, Weiss R. ''Proc Natl Acad Sci U S A.'' 2004 Feb 24; '''101'''(8):2221-2.
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[http://www.pnas.org/cgi/content/full/101/8/2221 Link]
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*''Bacterial biosynthesis of a calcium phosphate bone-substitute material.''
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Thackray A C, Sammons R L, Macaskie L E, Yong P, Lugg H, Marquis P. ''Journal of Materials Science: Materials in Medicine.'' April 2004, '''15''' 403 - 406 [http://www.springerlink.com/(a5z5xk45yoycugbyly1u2hei)/app/home/contribution.asp?referrer=parent&backto=issue,19,44;journal,28,166;linkingpublicationresults,1:100192,1 Link]
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*''Some like it hot: spicing up ion channels.''
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Clapham D E. ''Nature 389'' October 1997, 783-784
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[http://www.nature.com/nature/journal/v389/n6653/full/389783a0_fs.html Link]
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*''Bioremediation of Arsenic, Chromium, Lead and Mercury .''
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Adebowale Adeniji, National Network of Environmental Management Studies Fellow, Office of Solid Waste and Emergency Response, U.S. Environmental Protection Agency, 2004.
 +
[http://www.clu-in.org/download/studentpapers/bio_of_metals_paper.pdf Link]
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*''Habit of bacterially induced precipitates of calcium carbonate and the influence of medium viscosity on mineralogy.''
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Buczynski C, Chafetz, H S, ''Journal of Sedimentary Petrology.'' March 1991, Vol 61, No 2, 226-233
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[http://jsedres.sepmonline.org/cgi/reprint/61/2/226 Link]
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'''Papers on modeling of gene regulation process'''
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 +
*''strcuture and function of the feed-forward loop network motif''
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Mangan S, Alon U, ''Proc Natl Acad Sci U S A.'' 2003, 100:11980-11985
 +
[http://www.pnas.org/cgi/content/full/100/21/11980 Link]
 +
 
 +
*''Design of gene circuits: lessons from bacteria''
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Wall ME, Hlavacek WS, Savageau MA ''Nature review genetics'' 2004, 5:34
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[http://www.nature.com/nrg/journal/v5/n1/full/nrg1244_fs.html Link]
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 +
*''Design principles for regulator gene expression in a repressible gene circuit''
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Wall ME, Hlavacek WS, Savageau MA ''J mol Biol'' 2003, 332:861-876
 +
 
 +
*''A synthetic oscillatory network of transcriptional regulators''
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Elowitz MB, Leibler S, ''Nature'' 2000, 403:335
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'''Edinburgh powerpoint template'''
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[[Image:Content template.ppt]]
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'''Introductory Presentations'''
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[http://2006.igem.org/Image:Biology_workshop1.ppt Microbiology]
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[http://2006.igem.org/Image:Biology_workshop2.ppt Molecular Biology]
 +
 
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[http://2006.igem.org/Image:Modelling_introduction.pdf Introduction to Modelling]
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[http://2006.igem.org/University_of_Edinburgh_2006 Main page]
[http://2006.igem.org/University_of_Edinburgh_2006 Main page]

Latest revision as of 14:31, 20 July 2006

  • Spatiotemporal control of gene expression with pulse-generating networks.

Basu S, Mehreja R, Thiberge S, Chen MT, Weiss R. Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6355-60. [http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=15096621 Link]

  • Production of the antimalarial drug precursor artemisinic acid in engineered yeast.

Dae-Kyun Ro et al. Nature. 2006 Apr 13; 440(7086): 940-943.[http://www.nature.com/nature/journal/v440/n7086/full/nature04640.html Link]

  • Synthetic biology: new engineering rules for an emerging discipline.

Andrianantoandro E, Basu S, Karig DK, Weiss R. Mol Syst Biol. Epub 2006 May 16.[http://www.nature.com/msb/journal/v2/n1/full/msb4100073.html Link]

  • Taking pictures with E. coli: signal processing using synthetic biology.

Levy M, Tabor JJ, Wong STC. IEEE Signal Processing Magazine 2006 May; 23(3): 140-142 [http://ieeexplore.ieee.org/iel5/79/34166/01628897.pdf? Link]

  • Teaching bacteria a new language.

Gerchman Y, Weiss R. Proc Natl Acad Sci U S A. 2004 Feb 24; 101(8):2221-2. [http://www.pnas.org/cgi/content/full/101/8/2221 Link]

  • Bacterial biosynthesis of a calcium phosphate bone-substitute material.

Thackray A C, Sammons R L, Macaskie L E, Yong P, Lugg H, Marquis P. Journal of Materials Science: Materials in Medicine. April 2004, 15 403 - 406 [http://www.springerlink.com/(a5z5xk45yoycugbyly1u2hei)/app/home/contribution.asp?referrer=parent&backto=issue,19,44;journal,28,166;linkingpublicationresults,1:100192,1 Link]

  • Some like it hot: spicing up ion channels.

Clapham D E. Nature 389 October 1997, 783-784 [http://www.nature.com/nature/journal/v389/n6653/full/389783a0_fs.html Link]

  • Bioremediation of Arsenic, Chromium, Lead and Mercury .

Adebowale Adeniji, National Network of Environmental Management Studies Fellow, Office of Solid Waste and Emergency Response, U.S. Environmental Protection Agency, 2004. [http://www.clu-in.org/download/studentpapers/bio_of_metals_paper.pdf Link]

  • Habit of bacterially induced precipitates of calcium carbonate and the influence of medium viscosity on mineralogy.

Buczynski C, Chafetz, H S, Journal of Sedimentary Petrology. March 1991, Vol 61, No 2, 226-233 [http://jsedres.sepmonline.org/cgi/reprint/61/2/226 Link]


Papers on modeling of gene regulation process

  • strcuture and function of the feed-forward loop network motif

Mangan S, Alon U, Proc Natl Acad Sci U S A. 2003, 100:11980-11985 [http://www.pnas.org/cgi/content/full/100/21/11980 Link]

  • Design of gene circuits: lessons from bacteria

Wall ME, Hlavacek WS, Savageau MA Nature review genetics 2004, 5:34 [http://www.nature.com/nrg/journal/v5/n1/full/nrg1244_fs.html Link]

  • Design principles for regulator gene expression in a repressible gene circuit

Wall ME, Hlavacek WS, Savageau MA J mol Biol 2003, 332:861-876

  • A synthetic oscillatory network of transcriptional regulators

Elowitz MB, Leibler S, Nature 2000, 403:335


Edinburgh powerpoint template

File:Content template.ppt


Introductory Presentations

[http://2006.igem.org/Image:Biology_workshop1.ppt Microbiology]

[http://2006.igem.org/Image:Biology_workshop2.ppt Molecular Biology]

[http://2006.igem.org/Image:Modelling_introduction.pdf Introduction to Modelling]


[http://2006.igem.org/University_of_Edinburgh_2006 Main page]

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