ETH Sim Constants

From 2006.igem.org

Revision as of 18:40, 15 September 2006 by Terzerm (Talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
% legend for parameter naming and usage:
% ======================================
% k : k         [] no dimension for input rate k
%               [1/min] for reactions depending on 1 molecule
%               [1/(min*muM)] for reactions depending on 2 molecules
%               reaction constant, protein level, 
%               kA, k_A for forward/backward for metabolite A
%               typical values are 1 for product formation, 10-100 for
%               encyme-substrate formation (~10% for backward)
% d : k_deg     [1/min]
%               degradation constant, dA for metabolite A
%               typical values are log(2)/time for degradation in time,
%               e.g. log(2)/30 for degradation in 30 min (when min is the
%               time scale)
% r : k(Tsc)    [] no dimension
%               reaction constant, dna level (transcription)
%               typical values are 10% of k, i.e. 0.1
% p : k'(Tsc)   [] no dimension
%               reaction constant, dba level, constitutive portion
%               typical values are 10% of r, i.e. 0.01
% l : k(Tsl)    [1/min]
%               reaction constant, rna level (translation)
%               typical values are same as k, i.e. 1
% n : n         [] no dimension
%               hill coefficient, dna level, typically integers from 1-4
% K : K         [muM] 
%               hill constant, dna level, typically in the k range, e.g.
%               1-100
Personal tools
Past/present/future years