ETH Simulation Scripts
From 2006.igem.org
modular scripts
Each file contains a createXXX() script for the device it contains. The created program object contains:
- function handles for reaction rates: r
- stoichiometric matrix: N
- constants (inside of the function handles)
- state (concentration) changes (the ode dy values) can be computed by: N · r
The modules can then be "connected" using the createInOutConnector() function. The result is again a device object, consisting of the connected basic device objects.
sim_1_1 and sim_1_2 can be used to simulate devices with 1 input/1 output and 1 input/2 outputs respectively, both basic and composite devices.
simulations contains the first examples, simulating
- XOR → simulation results / sensitivity analysis
- AND-tRNA → simulation results / sensitivity analysis
- IPTG Sensing →simulation results
- PoPS Duplexer →simulation results
- Compound module: IPTG Sensing → PoPS Duplexer →simulation results
All scripts: matlab_modules.zip (<0.1M)
