From 2006.igem.org

Revision as of 11:51, 1 October 2005 (view source) Robink (Talk | contribs) ← Older edit		Revision as of 12:05, 1 October 2005 (view source) Robink (Talk | contribs) Newer edit →
Line 44:		Line 44:
	* [[Timeline and Tasklist]]		* [[Timeline and Tasklist]]
	* [[Cloning Schedule]]		* [[Cloning Schedule]]
-
	= Project Documentation =		= Project Documentation =
	== Introduction ==		== Introduction ==
		+	Selected Project: We have voted that the Counter-approach would be the more suitable in the context of iGEM.  The Counter-project selected for further development if time allow us possibly merged with one or two modules from the [[Project_X|SO-Constructor]] as output modules.
		+
	== Concept ==		== Concept ==
	== Modeling ==		== Modeling ==
		+	Modeling information can be found on this page: [[Modeling and overall design]]
		+
		+	This group is focused on mathematical modeling, illustration, simulations and overall design. There are no permanent members for this group. Anyone can join and leave the group anytime he/she wants. A group coordinator will be assigned at the first meeting.
		+	* Group Members: Tamara, Kristian, Zlatko
	== Implementation ==		== Implementation ==
	=== Input Module ===		=== Input Module ===
		+	The Input Module information can be found on this page: [[Input-module]]
		+
		+	Module description: in a nutshell, this module has 2 system boundaries, both of which are characterized by PoPS. Its purpose is to take a single input PoPS and output 2 different PoPS. One of the outputs should be high and the other low when S is high and vice versa when S is low. '''Check [[Input-module|here]] for more details'''.
		+	* Group Members: Christophe, Dominic ([[Dominic_Frutiger|coordinator]]), Giorgia, Herve, Zlatko
	==== Purpose ====		==== Purpose ====
	==== Schematic ====		==== Schematic ====
Line 57:		Line 66:
	==== Actual Implementation ====		==== Actual Implementation ====
	=== NOR Module ===		=== NOR Module ===
		+	The NOR Module information can be found on this page: [[NOR-module]]
		+
		+	A NOR-module works as follows: There are two inputs and one output. The output is high if and only if the two inputs are low. In other words: The output is low whenever either one (or both) of the inputs are high.
		+	* Group Members: Alex (coordinator), Jonas, Robin, Simon, Tamara, Urs
	==== Purpose ====		==== Purpose ====
	==== Schematic ====		==== Schematic ====
Line 65:		Line 78:
	== Discussion ==		== Discussion ==
	== References ==		== References ==
-	== Glossary ==
-
-
-
-	= [[Previous Ideas]] =
-	This is the brainstorming and previous ideas section. In this section you will find other projects that had been pursued, as well as random ideas without too much consideration of feasibility, etc.
-
-	= Selected Project: Counter =
-	We have voted that the Counter-approach would be the more suitable in the context of iGEM.  The Counter-project selected for further development if time allow us possibly merged with one or two modules from the [[Project_X|SO-Constructor]] as output modules.
-
-	= Modules =
-	The project  has been split in submodules and corresponding groups:
-
-	== [[Input-module]] ==
-	Module description: in a nutshell, this module has 2 system boundaries, both of which are characterized by PoPS. Its purpose is to take a single input PoPS and output 2 different PoPS. One of the outputs should be high and the other low when S is high and vice versa when S is low. '''Check [[Input-module|here]] for more details'''.
-
-	* Group Members: Christophe, Dominic ([[Dominic_Frutiger|coordinator]]), Giorgia, Herve, Zlatko
-
-	'''Next Input-group Session:'''
-	'''coming.'''
-
-	== [[NOR-module]] ==
-	A NOR-module works as follows: There are two inputs and one output. The output is high if and only if the two inputs are low. In other words: The output is low whenever either one (or both) of the inputs are high.
-
-	* Group Members: Alex (coordinator), Jonas, Robin, Simon, Tamara, Urs
-
-	'''Next Group Session:'''
-	'''coming...'''
-
-	== [[Modeling and overall design]] ==
-	This group is focused on mathematical modeling, illustration, simulations and overall design. There are no permanent members for this group. Anyone can join and leave the group anytime he/she wants. A group coordinator will be assigned at the first meeting.
-	* Group Members: Tamara, Kristian, Zlatko
-	Next Meeting( open )
-
-	== [[Output Extension]] ==
-
-	= External Information =
-
	=== Links ===		=== Links ===
-
	* [[Modeling and illustration tools]]		* [[Modeling and illustration tools]]
Line 134:		Line 108:
	[[Segal99]],		[[Segal99]],
	[[Segal03]],		[[Segal03]],
		+
		+	== Glossary ==
		+	== Appendix ==
		+	=== [[Previous Ideas]] ===
		+	This is the brainstorming and previous ideas section. In this section you will find other projects that had been pursued, as well as random ideas without too much consideration of feasibility, etc.

---

Revision as of 12:05, 1 October 2005

Contents 1 Organisation 1.1 People 1.1.1 Students 1.1.2 Supervisors 1.1.3 Advisors 1.2 Timeline & Tasks 2 Project Documentation 2.1 Introduction 2.2 Concept 2.3 Modeling 2.4 Implementation 2.4.1 Input Module 2.4.1.1 Purpose 2.4.1.2 Schematic 2.4.1.3 Strategies & Evaluation 2.4.1.4 Actual Implementation 2.4.2 NOR Module 2.4.2.1 Purpose 2.4.2.2 Schematic 2.4.2.3 Strategies & Evaluation 2.4.2.4 Actual Implementation 2.4.3 Integration 2.5 Results 2.6 Discussion 2.7 References 2.7.1 Links 2.7.2 Papers 2.8 Glossary 2.9 Appendix 2.9.1 Previous Ideas

Organisation

People

Students

Simon Barkow	Christophe Dessimoz	Zlatko Franjcic
Dominic Frutiger	Robin Künzler	Urs A. Müller
Jonas Nart	Kristian Nolde	Alexander Roth
Tamara Ulrich	Giorgia Valsesia	Herve Vanderschuren

Supervisors

Jörg Stelling

Sven Panke

Eckart Zitzler

Advisors

Uwe Sauer	Martin Fussenegger	Andreas Hierlemann
Kay-Uwe Kirstein	Ruedi Aebersold

Timeline & Tasks

• Upcoming Talks
• Meetings
• Timeline and Tasklist
• Cloning Schedule

Project Documentation

Introduction

Selected Project: We have voted that the Counter-approach would be the more suitable in the context of iGEM. The Counter-project selected for further development if time allow us possibly merged with one or two modules from the SO-Constructor as output modules.

Concept

Modeling

Modeling information can be found on this page: Modeling and overall design

This group is focused on mathematical modeling, illustration, simulations and overall design. There are no permanent members for this group. Anyone can join and leave the group anytime he/she wants. A group coordinator will be assigned at the first meeting.

• Group Members: Tamara, Kristian, Zlatko

Implementation

Input Module

The Input Module information can be found on this page: Input-module

Module description: in a nutshell, this module has 2 system boundaries, both of which are characterized by PoPS. Its purpose is to take a single input PoPS and output 2 different PoPS. One of the outputs should be high and the other low when S is high and vice versa when S is low. Check here for more details.

• Group Members: Christophe, Dominic (coordinator), Giorgia, Herve, Zlatko

Purpose

Schematic

Strategies & Evaluation

Actual Implementation

NOR Module

The NOR Module information can be found on this page: NOR-module

A NOR-module works as follows: There are two inputs and one output. The output is high if and only if the two inputs are low. In other words: The output is low whenever either one (or both) of the inputs are high.

• Group Members: Alex (coordinator), Jonas, Robin, Simon, Tamara, Urs

Purpose

Schematic

Strategies & Evaluation

Actual Implementation

Integration

Results

Discussion

References

Links

• Modeling and illustration tools

Papers

bulter04, atkinson03, bates05, keiler01, suetsugu03, sudesh00, römling02, ross91, sutherland01, Lai04, zogaj01, miller01, basu05, goryachev05, you04, Isalan01, Beerli02, Mani05, Beerli00, Beerli98, Dreier01, Dreier05, Klug05, Yang95, Segal99, Segal03,

Glossary

Appendix

Previous Ideas

This is the brainstorming and previous ideas section. In this section you will find other projects that had been pursued, as well as random ideas without too much consideration of feasibility, etc.