From 2006.igem.org
% legend for parameter naming and usage:
% ======================================
% k : k [] no dimension for input rate k
% [1/min] for reactions depending on 1 molecule
% [1/(min*muM)] for reactions depending on 2 molecules
% reaction constant, protein level,
% kA, k_A for forward/backward for metabolite A
% typical values are 1 for product formation, 10-100 for
% encyme-substrate formation (~10% for backward)
% d : k_deg [1/min]
% degradation constant, dA for metabolite A
% typical values are log(2)/time for degradation in time,
% e.g. log(2)/30 for degradation in 30 min (when min is the
% time scale)
% r : k(Tsc) [] no dimension
% reaction constant, dna level (transcription)
% typical values are 10% of k, i.e. 0.1
% p : k'(Tsc) [] no dimension
% reaction constant, dba level, constitutive portion
% typical values are 10% of r, i.e. 0.01
% l : k(Tsl) [1/min]
% reaction constant, rna level (translation)
% typical values are same as k, i.e. 1
% n : n [] no dimension
% hill coefficient, dna level, typically integers from 1-4
% K : K [muM]
% hill constant, dna level, typically in the k range, e.g.
% 1-100
