Documentation ToDo's

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'''Here you can find and extend a list of things that need to be done in the Project Documentation section.''' In brackets there is a suggestion of who could perform the change or addition, or find someone else to do it. == Global Tasks == * Review/extend Christophe's '''introduction''' (talk about background of Synthetic Biology, our motivation, mention the variants we have developed, conclude with our decision to implement the counter). * (Robin) Make an '''illustration of the state machine''', possibly including a chart with all subsequent transitions and states???. * (Robin, Dominic) Include/redesign the '''concept section''', include/redesign contents of [[Introduction]] draft page. * (Alex) Make an new illustration of the '''block diagram''' of the system and write more text on the system architecture. * (Alex or Zlatko?) Make an illustration of the '''parts diagram''' according to Randy's conventions. * Check for consistency / update all '''registry parts''' online. * Someone write results, later discussion and conclusion - those we have and those we have not. == Concept == * The output needs to be clearly labeled (-> state 3) == EPD == * (Dominic, others?) Make an illustration of the '''qualitative input-output dependence of EPD''' * (Dominic, others?) Make an illustration of the '''qualitative input-output dependence of EPD, including internal mechanisms''' * (Dominic) Extend the experimental section. * (Dominic) In the purpose of the input module, you write about the Signal 'S'. But this signal is neighter in the picture, nor explained anywhere in the text. * (Dominic) In the schematic of the input module: The names in the legend do not correspond to the names in the picture. == 4SD == * (Robin?) Fit the content of the Chapter to the following structure: Purpose, Schematic, Strategies & Evaluation, Actual Implementation * (???) In the purpose section we should describe in detail how the NOR module fits into the counter system. * (???) Revise the introduction of the NOR Module on the Main Page * (???) Describe the words 'Zinc Hand' 'Zinc Finger' in the glossary * (Alex) Design -> Repressors: What do you want to write about RNA Polymerase? * (Alex) Design -> Repressors -> Zinc Finger Proteins: You write that we use several different designs. Is this still up to date? * (Alex, ???) Design -> Repressors -> Zinc finger Protein Binding Sites: I think it would be nice to have some pictures there. * (Alex) Design -> Interconnected NOR System -> Repression: This section is not up to date (As far as I understand, we decided not to use any repressor connectet to the ZF) * (Alex) Design -> Interconnected NOR System -> Additional Comments: Maybe not up to date. * (Alex) Syntesis and Assembly: Section has to be completed. == Modeling == * (Tamara, Kris) Adapt the current model and account for different max/mins of Pr and Prm. Check consistency of illustrations with new (upcoming) illustrations and definitions * Adapt text, insert subtitles, keep main page minimal.

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