ETH Sim Mod AND tRNA
From 2006.igem.org
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simulated with these constants (constants legend)
case '2h prot. half life'
% approximate (median) concentration of I1/I2/I1p/I2p
% used for k/K constants depending on this concentration
stateT7R = 250;
k.T7R = .1; % []
k.tRNA = .1; % []
l.T7R = 1/stateT7R; % [1/(muM*min)] depending on T7R
l.T7Rd = .1; % [1/min]
l.tRNA = .1; % [1/min]
d.T7R = log(2)/120; % [1/min]
d.T7Rd = log(2)/120;
d.tRNA = log(2)/(60*24*2);
d.mT7R = log(2)/30;
d.mtRNA = log(2)/30;
d.mOut = log(2)/30;
d.Out = log(2)/120;
r.Out = 0.1; % []
p.Out = 0.1 * r.Out; % a*r []
l.Out = 1; % [1/min]
K.Out = stateT7R; % muM--> depending on T7R
n.Out = 1; % []
simulated with these constants (constants legend)
otherwise %case '5h prot. half life'
% approximate (median) concentration of I1/I2/I1p/I2p
% used for k/K constants depending on this concentration
stateT7R = 400;
k.T7R = .1; % []
k.tRNA = .1; % []
l.T7R = 1/stateT7R; % [1/(muM*min)] depending on T7R
l.T7Rd = .1; % [1/min]
l.tRNA = .1; % [1/min]
d.T7R = log(2)/300; % [1/min]
d.T7Rd = log(2)/300;
d.tRNA = log(2)/(60*24*2);
d.mT7R = log(2)/30;
d.mtRNA = log(2)/30;
d.mOut = log(2)/30;
d.Out = log(2)/300;
r.Out = 0.1; % []
p.Out = 0.1 * r.Out; % a*r []
l.Out = 1; % [1/min]
K.Out = stateT7R; % muM--> depending on T7R
n.Out = 1; % []
