Tokyo Alliance: Conclusion

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----
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[[Image:Tokyo_familytree_061022.jpg|800px|Construction Family Tree (rev.1022)]]
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==Results==
-
We constructed YES gates and AND gates shown above accorinding to our [[Tokyo_Alliance:_Design/Method#Construction_Phase| Construction Procedure]].
+
===Candidates of Inducible Regulators===
-
==Construction Index==
+
We searched several number of, actually at least 7, regulators inducible by different chemicals.
 +
This list is the candidates of such a regulator.
-
*'''A''' pSB#4 "pSBΔP"
+
[[Image:tokyo_candidates.jpg|400px|Candidates of Inducible Regulators]]
-
**'''A-1''' MelR
+
 
-
**'''A-2''' EmrR
+
 
 +
===Construction Family Tree===
 +
 
 +
 
 +
Using these regulatory sequences, we constructed these iGEM parts. There are 22 different logic gates actually made.  Some of them are ANDgates.
 +
 
 +
[[Image:Tokyo_familytree_061022_2.jpg|800px|Construction Family Tree (rev.1022)]]
 +
 
 +
We constructed YES gates and AND gates shown above accorinding to our [[Tokyo_Alliance:_Design/Method#Construction_Phase  | Procedure]].
 +
 
 +
===Construction Index===
 +
 
 +
*'''A''' pSB#4 "pSBΔP"   [http://partsregistry.org/Part:BBa_J54103  J54103]
 +
**'''A-1''' MelR     [http://partsregistry.org/Part:BBa_J54111  J54111]
 +
**'''A-2''' EmrR     [http://partsregistry.org/Part:BBa_J54121  J54121]
***'''A-20-''a1''''' EmrR-FadR
***'''A-20-''a1''''' EmrR-FadR
-
**'''A-3''' BetI
+
**'''A-3''' BetI     [http://partsregistry.org/Part:BBa_J54131  J54131]
-
**'''A-4''' LuxR
+
**'''A-4''' LuxR     [http://partsregistry.org/Part:BBa_J54140  J54140]
-
***'''A-40-''a1''''' LuxR-FadR
+
***'''A-40-''a1''''' LuxR-FadR     [http://partsregistry.org/Part:BBa_J54141  J54141]
-
***'''A-40-''a2''''' luxR-TetR
+
***'''A-40-''a2''''' luxR-TetR     [http://partsregistry.org/Part:BBa_J54142  J54142]
-
***'''A-40-''a3''''' LuxR-LacI tandem
+
***'''A-40-''a3''''' LuxR-LacI tandem     [http://partsregistry.org/Part:BBa_J54143  J54143]
-
**'''A-5''' AraC
+
**'''A-5''' AraC     [http://partsregistry.org/Part:BBa_J54150  J54150]
-
***'''A-50-''a1''''' AraC-FadR
+
***'''A-50-''a1''''' AraC-FadR     [http://partsregistry.org/Part:BBa_J54152  J54152]
-
***'''A-50-''a2''''' AraC-TetR
+
***'''A-50-''a2''''' AraC-TetR     [http://partsregistry.org/Part:BBa_J54153  J54153]
-
***'''A-50-''a3''''' AraC-LacI tandem
+
***'''A-50-''a3''''' AraC-LacI tandem     [http://partsregistry.org/Part:BBa_J54154  J54154]
-
*'''B''' pSB Lacq prom. #4
+
*'''B''' pSB Lacq prom. #4     [http://partsregistry.org/Part:BBa_J54202  J54202]
-
**'''B-1''' RbsR
+
**'''B-1''' RbsR     [http://partsregistry.org/Part:BBa_J54212  J54212]
-
**'''B-2''' FadR
+
**'''B-2''' FadR     [http://partsregistry.org/Part:BBa_J54222  J54222]
***'''B-21''' FadR tandem
***'''B-21''' FadR tandem
-
**'''B-3''' TetR
+
**'''B-3''' TetR     [http://partsregistry.org/Part:BBa_J54232  J54232]
**'''B-4''' LVA
**'''B-4''' LVA
-
**'''B-5''' LacI (Library)
+
**'''B-5''' LacI (Library)     [http://partsregistry.org/Part:BBa_J54251  J54251]
***'''B-51''' LVA
***'''B-51''' LVA
-
***'''B-52''' LacI tandem
+
***'''B-52''' LacI tandem     [http://partsregistry.org/Part:BBa_J54252  J54252]
****'''B-52-''a1''''' LacI tandem-TetR
****'''B-52-''a1''''' LacI tandem-TetR
 +
*'''C''' pSB LacI prom. #1
*'''C''' pSB LacI prom. #1
 +
*'''D''' pSB TyrS prom.
*'''D''' pSB TyrS prom.
**'''D-1''' TyrS
**'''D-1''' TyrS
 +
*'''E''' natural LacI prom.
*'''E''' natural LacI prom.
 +
 +
----
 +
 +
[http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2006partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2006&group=Tokyo  Tokyo Alliance iGEM registry list]
 +
 +
===Data===
 +
 +
In our assay, we can measure fluorescence resonance of GFP of E.coli cultured in liquid medium with or without chemicals.
 +
 +
By addition of a inducer, GFP fluorescence will increase.
 +
 +
==Conclusion==
 +
 +
*Conclusion
 +
We can say we will expand the number of regulator genes we can use to build logic gates and through this project we made simple constructing method.
 +
 +
*Future Work
 +
It must be possible to construct functioning AND gates with our systematic construction strategy.
 +
And with same method, it is possible to make ANDAND gates, also. In order to make Noughts and Crosses game, we need 11 AND gates and 10 ANDAND gates.
 +
 +
Not tested yet, we already have planned 7AND gates.  It may not be so hard to complete the set of logic gates and combine them into Noughts and Crosses.
 +
 +
We recently change transition diagram and found that the number of inputs can be reduced into just 6. So the implementation of SYANAC will be little bit easier.

Latest revision as of 08:35, 7 November 2006

Top : Introduction : Significance : Design/Method : Results/Conclusion : About Tokyo Alliance

Contents

Results

Candidates of Inducible Regulators

We searched several number of, actually at least 7, regulators inducible by different chemicals. This list is the candidates of such a regulator.

Candidates of Inducible Regulators


Construction Family Tree

Using these regulatory sequences, we constructed these iGEM parts. There are 22 different logic gates actually made. Some of them are ANDgates.

Construction Family Tree (rev.1022)

We constructed YES gates and AND gates shown above accorinding to our Procedure.

Construction Index

  • A pSB#4 "pSBΔP" [http://partsregistry.org/Part:BBa_J54103 J54103]
    • A-1 MelR [http://partsregistry.org/Part:BBa_J54111 J54111]
    • A-2 EmrR [http://partsregistry.org/Part:BBa_J54121 J54121]
      • A-20-a1 EmrR-FadR
    • A-3 BetI [http://partsregistry.org/Part:BBa_J54131 J54131]
    • A-4 LuxR [http://partsregistry.org/Part:BBa_J54140 J54140]
      • A-40-a1 LuxR-FadR [http://partsregistry.org/Part:BBa_J54141 J54141]
      • A-40-a2 luxR-TetR [http://partsregistry.org/Part:BBa_J54142 J54142]
      • A-40-a3 LuxR-LacI tandem [http://partsregistry.org/Part:BBa_J54143 J54143]
    • A-5 AraC [http://partsregistry.org/Part:BBa_J54150 J54150]
      • A-50-a1 AraC-FadR [http://partsregistry.org/Part:BBa_J54152 J54152]
      • A-50-a2 AraC-TetR [http://partsregistry.org/Part:BBa_J54153 J54153]
      • A-50-a3 AraC-LacI tandem [http://partsregistry.org/Part:BBa_J54154 J54154]


  • B pSB Lacq prom. #4 [http://partsregistry.org/Part:BBa_J54202 J54202]
    • B-1 RbsR [http://partsregistry.org/Part:BBa_J54212 J54212]
    • B-2 FadR [http://partsregistry.org/Part:BBa_J54222 J54222]
      • B-21 FadR tandem
    • B-3 TetR [http://partsregistry.org/Part:BBa_J54232 J54232]
    • B-4 LVA
    • B-5 LacI (Library) [http://partsregistry.org/Part:BBa_J54251 J54251]
      • B-51 LVA
      • B-52 LacI tandem [http://partsregistry.org/Part:BBa_J54252 J54252]
        • B-52-a1 LacI tandem-TetR


  • C pSB LacI prom. #1


  • D pSB TyrS prom.
    • D-1 TyrS


  • E natural LacI prom.

[http://partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2006partsregistry.org/cgi/partsdb/pgroup.cgi?pgroup=iGEM2006&group=Tokyo Tokyo Alliance iGEM registry list]

Data

In our assay, we can measure fluorescence resonance of GFP of E.coli cultured in liquid medium with or without chemicals.

By addition of a inducer, GFP fluorescence will increase.

Conclusion

  • Conclusion

We can say we will expand the number of regulator genes we can use to build logic gates and through this project we made simple constructing method.

  • Future Work

It must be possible to construct functioning AND gates with our systematic construction strategy. And with same method, it is possible to make ANDAND gates, also. In order to make Noughts and Crosses game, we need 11 AND gates and 10 ANDAND gates.

Not tested yet, we already have planned 7AND gates. It may not be so hard to complete the set of logic gates and combine them into Noughts and Crosses.

We recently change transition diagram and found that the number of inputs can be reduced into just 6. So the implementation of SYANAC will be little bit easier.

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