Aromatic Bacteria : Chiba 2006

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*[[User:Suzuki|keiichi suzuki]]
*[[User:Suzuki|keiichi suzuki]]
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===schedule===
 
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<pre>
 
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            9/7  8  9  10  11  12  13  14  15  16  17  18
 
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Daisuke                                                         
 
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Kensuke          x                             
 
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Mayu        x                                             
 
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Shizuka                                                       
 
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Keiichi                                                         
 
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</pre>
 
==How it works==
==How it works==
[[Image:How it works.jpg]]
[[Image:How it works.jpg]]
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Firstly,we are going to make E.coli that smell good!
Firstly,we are going to make E.coli that smell good!
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We are going to get DNA that codes these products synthases. <br>
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We are going to get gene that codes these products synthases. <br><br>
[http://en.wikipedia.org/wiki/Carene Carene]<br>
[http://en.wikipedia.org/wiki/Carene Carene]<br>
[http://en.wikipedia.org/wiki/Limonene Limonene]<br>
[http://en.wikipedia.org/wiki/Limonene Limonene]<br>
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[http://en.wikipedia.org/wiki/Pinene Pinene]<br>
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[http://en.wikipedia.org/wiki/Pinene Pinene] [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=2411482 sequence]<br>
[http://en.wikipedia.org/wiki/Linalool Linalool]<br>
[http://en.wikipedia.org/wiki/Linalool Linalool]<br>
[http://en.wikipedia.org/wiki/Geraniol Geraniol]<br>
[http://en.wikipedia.org/wiki/Geraniol Geraniol]<br>
[http://en.wikipedia.org/wiki/Farnesene Farnesene]<br>
[http://en.wikipedia.org/wiki/Farnesene Farnesene]<br>
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PCB reacts redlight (that is about 660nm). If we change PCB to PΦB and PEB , the absorption wavelength  shifts 15nm respectively. <br>
PCB reacts redlight (that is about 660nm). If we change PCB to PΦB and PEB , the absorption wavelength  shifts 15nm respectively. <br>
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[Image:light receptor.jpg]
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[[Image:light receptor.jpg]]
These are a structure of chromophore.  
These are a structure of chromophore.  
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[Image:chromophore.jpg]
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[[Image:chromophore.jpg]]
===carotenoid===
===carotenoid===
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We are going to use the EBIY. EBIY produces ricopen. That puts out orange color.
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==parts==
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*[http://partsregistry.org/Part:BBa_R0083 Part:BBa_R0083]
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==another works==
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We are also going to make these systems.
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[[Image:aroma pathway.jpg]]
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==papers==
==papers==
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Takayuki Kohchi(2001)
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Aroma etc…
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15236249 Yasuo Yoshikuni(2004)-Mono and diterpene production in Escherichia coli.]
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15577217&dopt=Abstract Gisho Honda(2004)cDNA isolation and functional expression of myrcene synthase from Perilla frutescens.]
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Light receptor etc…
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16458890&dopt=Abstract  Takayuki Kohchi(2006)-Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli.]
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[http://www.pnas.org/cgi/content/full/101/50/17334?ck=nck J.Clark Lagarias(2004)-Harnessing phytochrome's glowing potential]
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carotenoid etc…
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[[http://www.pnas.org/cgi/content/full/101/50/17334?ck=nck J.Clark Lagarias(2004)-Harnessing phytochrome's glowing potential]]
 
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==news==
==news==
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*9/5--We solved a problem yesterday. PUC-EBI was very dirty so it caused a lot of problem. After cleaning it, We got a clean band of PUC-EBI（linear）.    
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*10/15--We succeeded a experiments of aroma! farnessene and pinene are a kind of sweet fragrance. Geraniol and pinene have a citrus flavor.  
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*9/4--We want to make PUC-EBIY. We got EBIY (it's orange color),but couldn't get PUC(vector).A band of PUC-EBI（linear）was very weak ,and we could see several bands. So we discussed what caused this problem.  
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*8/29--We discussed about the light sensor bacteria.
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*9/23--We succesed yesterday's experiment. The smell of geraniol that is produced E.coli was a kind of citrus.  
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*8/12--Our first experiment using an aroma oil(Sweet Flavor-smells like orange).  10μl of oil was necessary for LB medium(solid and liquid) to smell good, or at least, better.
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*8/4 -- We created parts J29021(generator-3 enzymes that is used to produce a lycopene) and J29022(device-light receptor and LacI).
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*9/22--We tested efficency of E.coli that makes geraniol.
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*8/4 -- We added EuY(J29030) and carene cyclase(J29036) to the Registry. 4 changes were made to carene cyclase to remove restriction sites of ecoR1 and pst1.
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*9/21--We are trying to make E.coli that makes geraniol.
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*9/12--We got a gene that codes geraniol synthase.  
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''view [[Aromatic Bacteria, Chiba 2006,: News|more]]''

Latest revision as of 12:02, 29 October 2006

Contents

concept

Aromaken4.jpg

Wow!! By lighting bacteria, a refreshing scent stars filling the room. In the dark, the light sensing E.coli will turn orenge. With the red light on, the color of E.coli fades out, and aroma is produced instead.

members


How it works

How it works.jpg




aroma

Firstly,we are going to make E.coli that smell good!

We are going to get gene that codes these products synthases.

[http://en.wikipedia.org/wiki/Carene Carene]
[http://en.wikipedia.org/wiki/Limonene Limonene]
[http://en.wikipedia.org/wiki/Pinene Pinene] [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=2411482 sequence]
[http://en.wikipedia.org/wiki/Linalool Linalool]
[http://en.wikipedia.org/wiki/Geraniol Geraniol]
[http://en.wikipedia.org/wiki/Farnesene Farnesene]



light receptor

Secondary,We are going to make a light receptor that react different wavelength.

PCB reacts redlight (that is about 660nm). If we change PCB to PΦB and PEB , the absorption wavelength shifts 15nm respectively.

Light receptor.jpg

These are a structure of chromophore. Chromophore.jpg

carotenoid

We are going to use the EBIY. EBIY produces ricopen. That puts out orange color.

parts

  • [http://partsregistry.org/Part:BBa_R0083 Part:BBa_R0083]


another works

We are also going to make these systems. File:Aroma pathway.jpg


papers

Aroma etc…

[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15236249 Yasuo Yoshikuni(2004)-Mono and diterpene production in Escherichia coli.]


[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15577217&dopt=Abstract Gisho Honda(2004)cDNA isolation and functional expression of myrcene synthase from Perilla frutescens.]





Light receptor etc…

[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16458890&dopt=Abstract Takayuki Kohchi(2006)-Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli.]

[http://www.pnas.org/cgi/content/full/101/50/17334?ck=nck J.Clark Lagarias(2004)-Harnessing phytochrome's glowing potential]


carotenoid etc…







news

  • 10/15--We succeeded a experiments of aroma! farnessene and pinene are a kind of sweet fragrance. Geraniol and pinene have a citrus flavor.
  • 9/23--We succesed yesterday's experiment. The smell of geraniol that is produced E.coli was a kind of citrus.
  • 9/22--We tested efficency of E.coli that makes geraniol.
  • 9/21--We are trying to make E.coli that makes geraniol.
  • 9/12--We got a gene that codes geraniol synthase.


view more

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