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iGEM 2005 The summer 2005 intercollegiate Genetically Engineered Machine competition.

Contents

Participating Schools

Click to see each team's parts

  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Berkeley Berkeley]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Caltech Caltech]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Cambridge Cambridge]

Davidson College Synth-Aces

[http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Davidson Davdison Parts in Registry]

[http://www.bio.davidson.edu/courses/synthetic/students.html Summer 2005 Research Students]

  • Links to Courses
    • [http://www.bio.davidson.edu/courses/synthetic/synthetic.html Synthetic Lab Course Fall 2005]
    • [http://www.bio.davidson.edu/genomics Genomics Lecture Course (with Systems Biology and Synthetic Biology Sections)]
    • [http://www.bio.davidson.edu/programs/Genomics/concentration.html Genomics Concentration (interdiciplinary minor)]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_ETHZ ETH_Zurich]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Harvard Harvard] 
If you would like help setting up a [http://karma.med.harvard.edu/wiki/iGEM_2005 WIKI], please, contact [http://karma.med.harvard.edu/wiki/User_talk:Alexanderwait me]!
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_MIT MIT]
    • [http://model.mit.edu/igem/ MIT team's WIKI]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Oklamhoma Oklahoma]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Penn_State Penn State]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Princeton Princeton]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Toronto Toronto]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_UCSF UCSF]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_UTAustin UT Austin]
  • [http://rosalind.csail.mit.edu/r/parts/partsdb/pgroup.cgi?pgroup=iGEM&group=iGEM_Registry Registry]

Events

Papers for Students to Read

General Review Papers

  • A. Malcolm Campbell. 2005. Meeting Report: Synthetic Biology Jamboree for Undergraduates. Cell Biology Education. 4: 19 - 23. (Meeting Report for 2004 Jamboree) [http://www.cellbioed.org/pdf/04-11-0047.pdf URL]
  • Dan Ferber. 2004. Microbes Made to Order. Science. Vol. 303: 158 - 161. (Good general overview), [http://www.sciencemag.org/cgi/content/full/303/5655/158 URL]
  • Jeff Hasty, David McMillen, and J. J. Collins. 2002. Engineered Gene Circuits. Nature. Vol. 420: 224 - 230. (Scholarly Review Paper), [http://www.nature.com/nature/journal/v420/n6912/abs/nature01257_fs.html URL]
  • Philip Ball. 2004. Starting from Scratch. Nature. Vol. 431: 624 - 626. (OK general overview), [http://www.nature.com/news/2004/041004/pf/431624a_pf.html URL]
  • Editors of Nature. 2004. Futures of Artificial Life. Nature. Vol. 431: 613. (Editorial that addresses ethical considerations), [http://www.bio.davidson.edu/courses/synthetic/papers/Synthetic_Editorial.pdf URL]

Research Papers in Synthetic Biology

  • Robert T. Batey, Sunny D. Gilbert, and Rebecca K. Montange. 2004. Structure of a Natural Guanine-responsive Riboswitch Complexed with a Metabolite Hypoxanthine. Nature. Vol. 432. 411 - 415. (Distinguishes Riboswitches from Aptamers and Antiswitches; also shows 3D structure of aptamer and ligand)
  • News Summary of Batey et al. 2004. (Batey et al., paper above)
  • Laising Yen et al. 2004. Exogenous Controlof Mammalian Gene Expression through Modulation of RNA Self-cleavage. Nature. Vol. 431: 471 - 476. (mRNA-mediated regulation of translation)
  • Yina Kuang, Israel Biran, and David R. Walt. 2004. Simultaneously Monitoring Gene Expression Kinetics and Genetic Noise in Single Cells by Optical Well Arrays. Analytical Chemistry. Vol. 76: 6282 - 6286. (Analysis of two promoters)
  • Sara Hooshangi, Stephan Thiberge, and Ron Weiss. 2005. Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. PNAS. 102(10): 3581–3586. (Basic Research Paper)
  • Bayer, Travis S. and Christina D. Smolke. 2005. Programable ligand-conrolled riboregulators of eukaryotic gene expression. Nature Biotechnology. 23 (3): 337 - 343. (Antiswithces that turn off or on mRNA translation, regulated by amptamer binding ligands)
  • Isaacs, Farren J. and James J. Collins. 2005. Plug-and-play with RNA. Nature Biotechnology. 23 (3): 306 -307. (Commentary on Bayer & Smolke, 2005.)

Possible Fun Groups

  1. Awards Panel
  2. Jamboree Planning
  3. Editorial Board
  4. Standards & Practice
  5. iGEM 2006 Planning
  6. Others (Publicity?)

Resources

  1. Blue Heron Point of Contact
  2. Part Nicknames

Please see [http://meta.wikipedia.org/wiki/MediaWiki_i18n documentation on customizing the interface] and the [http://meta.wikipedia.org/wiki/MediaWiki_User%27s_Guide User's Guide] for usage and configuration help.

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