Aromatic Bacteria : Chiba 2006

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-	[[Image:aromaken3.jpg|left]]	+	==concept==
-	<br><br><br><br><br><br><br><br>	+	[[Image:aromaken4.jpg]]
-	<br><br><br><br><br><br><br><br>	+
	Wow!! By lighting bacteria, a refreshing scent		Wow!! By lighting bacteria, a refreshing scent
Line 18:		Line 17:
	*[[User:Suzuki|keiichi suzuki]]		*[[User:Suzuki|keiichi suzuki]]
-	''schedule''
-	<pre>
-	9/7  8  9  10  11  12  13  14  15  16  17  18
-	Daisuke
-	Kensuke
-	Mayu
-	Shizuka
-	Keiichi
-	</pre>
	==How it works==		==How it works==
		+	[[Image:How it works.jpg]]
-	Firstly,we are going to make E.coli that smell good.
Line 38:		Line 28:
		+	===aroma===
		+	Firstly,we are going to make E.coli that smell good!
		+	We are going to get gene that codes these products synthases. <br><br>
		+	[http://en.wikipedia.org/wiki/Carene Carene]<br>
		+	[http://en.wikipedia.org/wiki/Limonene Limonene]<br>
		+	[http://en.wikipedia.org/wiki/Pinene Pinene] [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=2411482 sequence]<br>
		+	[http://en.wikipedia.org/wiki/Linalool Linalool]<br>
		+	[http://en.wikipedia.org/wiki/Geraniol Geraniol]<br>
		+	[http://en.wikipedia.org/wiki/Farnesene Farnesene]<br>
-	Secondary,We are going to make light receptor that react different wavelength.
-	PCB react light about 660nm.   PΦB PEB	+	===light receptor===
		+	Secondary,We are going to make a light receptor that react different wavelength.
		+	PCB reacts redlight (that is about 660nm). If we change PCB to PΦB and PEB , the absorption wavelength  shifts 15nm respectively. <br>
-	Heme	+	[[Image:light receptor.jpg]]
-	↓Ho1	+
-	BV	+
-	↓PcyA           ↓ｍHY2       ↓PebA、PebB	+
-	PCB     PΦB PEB	+
		+	These are a structure of chromophore.
		+	[[Image:chromophore.jpg]]
		+	===carotenoid===
		+	We are going to use the EBIY. EBIY produces ricopen. That puts out orange color.
		+	==parts==
		+	*[http://partsregistry.org/Part:BBa_R0083 Part:BBa_R0083]
		+	==another works==
		+	We are also going to make these systems.
		+	[[Image:aroma pathway.jpg]]
		+
		+	==papers==
		+	Aroma etc…
		+	[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15236249 Yasuo Yoshikuni(2004)-Mono and diterpene production in Escherichia coli.]
-	==agenda==	+
-	*9/5--We solved a problem at yesterday. PUC-EBI was very dirty. So it caused a lot of problem. After cleaning it, We got clean band of PUC-EBI（linear）.	+	[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15577217&dopt=Abstract Gisho Honda(2004)cDNA isolation and functional expression of myrcene synthase from Perilla frutescens.]
-	*9/4--We want to make PUC-EBIY. We got EBIY (it's orenge color),but couldn't get PUC(vector).A band of PUC-EBI（linear）was very weak ,and We could see several band. So we discussed what caused this problem.	+
-	*8/29--We discussed light sensor bacteria.	+
-	*8/12--Our first experiment using an aroma oil(Sweet Flavor-smells like orange). 10μl of oil was necessary for LB培地(solid and liquid) to smell good, or at least, better.	+
-	*8/4 -- We created parts J29021(generator-3 enzymes that is used to produce a lycopene) and J29022(device-light receptor and LacI).	+
-	*8/4 -- We added EuY(J29030) and carene cyclase(J29036) to the Registry. 4 changes were made to carene cyclase to remove restriction sites of ecoR1 and pst1.	+
		+
		+
		+
		+	Light receptor etc…
		+
		+	[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16458890&dopt=Abstract  Takayuki Kohchi(2006)-Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli.]
		+
		+	[http://www.pnas.org/cgi/content/full/101/50/17334?ck=nck J.Clark Lagarias(2004)-Harnessing phytochrome's glowing potential]
		+
		+
		+	carotenoid etc…
		+
		+
		+
		+
		+
		+
		+
		+
		+
		+
		+
		+
		+	==news==
		+	*10/15--We succeeded a experiments of aroma! farnessene and pinene are a kind of sweet fragrance. Geraniol and pinene have a citrus flavor.
		+
		+	*9/23--We succesed yesterday's experiment. The smell of geraniol that is produced E.coli was a kind of citrus.
		+
		+	*9/22--We tested efficency of E.coli that makes geraniol.
		+
		+	*9/21--We are trying to make E.coli that makes geraniol.
		+
		+	*9/12--We got a gene that codes geraniol synthase.
		+
		+
		+	''view [[Aromatic Bacteria, Chiba 2006,: News|more]]''

---

Latest revision as of 12:02, 29 October 2006

Contents 1 concept 2 members 3 How it works 3.1 aroma 3.2 light receptor 3.3 carotenoid 4 parts 5 another works 6 papers 7 news

concept

Wow!! By lighting bacteria, a refreshing scent stars filling the room. In the dark, the light sensing E.coli will turn orenge. With the red light on, the color of E.coli fades out, and aroma is produced instead.

members

• daisuke abe
• kensuke nakajima
• mayu ikezumi
• shizuka fukushima
• keiichi suzuki

How it works

aroma

Firstly,we are going to make E.coli that smell good!

We are going to get gene that codes these products synthases.

[http://en.wikipedia.org/wiki/Carene Carene]
[http://en.wikipedia.org/wiki/Limonene Limonene]
[http://en.wikipedia.org/wiki/Pinene Pinene] [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=2411482 sequence]
[http://en.wikipedia.org/wiki/Linalool Linalool]
[http://en.wikipedia.org/wiki/Geraniol Geraniol]
[http://en.wikipedia.org/wiki/Farnesene Farnesene]

light receptor

Secondary,We are going to make a light receptor that react different wavelength.

PCB reacts redlight (that is about 660nm). If we change PCB to PΦB and PEB , the absorption wavelength shifts 15nm respectively.

These are a structure of chromophore.

carotenoid

We are going to use the EBIY. EBIY produces ricopen. That puts out orange color.

parts

• [http://partsregistry.org/Part:BBa_R0083 Part:BBa_R0083]

another works

We are also going to make these systems. File:Aroma pathway.jpg

papers

Aroma etc…

[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15236249 Yasuo Yoshikuni(2004)-Mono and diterpene production in Escherichia coli.]

[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15577217&dopt=Abstract Gisho Honda(2004)cDNA isolation and functional expression of myrcene synthase from Perilla frutescens.]

Light receptor etc…

[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16458890&dopt=Abstract Takayuki Kohchi(2006)-Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli.]

[http://www.pnas.org/cgi/content/full/101/50/17334?ck=nck J.Clark Lagarias(2004)-Harnessing phytochrome's glowing potential]

carotenoid etc…

news

• 10/15--We succeeded a experiments of aroma! farnessene and pinene are a kind of sweet fragrance. Geraniol and pinene have a citrus flavor.

• 9/23--We succesed yesterday's experiment. The smell of geraniol that is produced E.coli was a kind of citrus.

• 9/22--We tested efficency of E.coli that makes geraniol.

• 9/21--We are trying to make E.coli that makes geraniol.

• 9/12--We got a gene that codes geraniol synthase.

view more