Brown:Journal club:Synthetic biology journal club
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- | {{Brown navigation bar}} | + | {{Brown navigation bar}} <br> |
- | ==[[ | + | =='''iGEM 2007'''== |
+ | ==11 April 2007== | ||
+ | Deepa to present Imperial iGEM presentation | ||
+ | [http://openwetware.org/wiki/IGEM:IMPERIAL/2006 Link to Imperial wiki] | ||
+ | |||
+ | =='''Archive'''== | ||
+ | ==25 July== | ||
+ | Annie to present article titled "Synthetic protein-protein interatction domains created by shuffling Cys2His2 zinc-fingers".<br> | ||
+ | [http://www.nature.com/msb/journal/v2/n1/full/msb4100053.html Link to Article] | ||
+ | |||
+ | ==18 July== | ||
+ | |||
+ | Jason to present on Article titled ''Environmentally Controlled Invasion of Cancer | ||
+ | Cells by Engineered Bacteria''. <br> | ||
+ | |||
+ | [http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6WK7-4HJRXGD-4-3&_cdi=6899&_user=489286&_orig=search&_coverDate=01%2F27%2F2006&_qd=1&_sk=996449995&view=c&wchp=dGLbVzb-zSkWA&md5=d973cfd361022b29e92d1ccc48c28b92&ie=/sdarticle.pdf PDF of Article] | ||
+ | |||
+ | |||
+ | ==11 July== | ||
+ | Brendan to present on Article titled ''Ultrasensitivity and Nosie Propagation in a Synthetic Transcriptional Cascade''. <br> | ||
+ | |||
+ | [http://www.pnas.org/cgi/reprint/102/10/3581 PDF of Article] | ||
+ | |||
+ | ==5 July== | ||
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here] | Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here] | ||
- | == | + | ==20 June== |
Hayato presents an article on producing the luciferace-magnetic particle complex. | Hayato presents an article on producing the luciferace-magnetic particle complex. | ||
6pm Walter Hall | 6pm Walter Hall | ||
- | == | + | ==16 May== |
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm | This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm | ||
- | == | + | ==9 May== |
Journal Club is in Walter Hall, 80 Waterman | Journal Club is in Walter Hall, 80 Waterman | ||
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Matthias Seydack | Matthias Seydack | ||
- | + | ==2 May== | |
- | == | + | |
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week. | [http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week. | ||
- | == | + | ==25 April== |
John to present, + overview of Biobricks | John to present, + overview of Biobricks | ||
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Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2 | Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2 | ||
- | == | + | ==18 April== |
Kara and Jesse | Kara and Jesse | ||
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Bayer TS, Smolke CD. | Bayer TS, Smolke CD. | ||
- | == | + | ==11 April== |
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks". | Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks". | ||
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Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal). | Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal). | ||
- | + | ==4 April== | |
- | == | + | |
Brendan and Peter will be presenting the article entitled "Engineering a | Brendan and Peter will be presenting the article entitled "Engineering a | ||
mevalonate pathway in Escherichia coli for production of terpenoids". | mevalonate pathway in Escherichia coli for production of terpenoids". | ||
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<Br> | <Br> | ||
- | == | + | ==21 March== |
- | + | ||
- | + | ||
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br> | Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br> | ||
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[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here] | [http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here] | ||
- | + | ==November 29, 2006== | |
- | == | + | Hayato will be presenting a paper on DNA autorepair. Wednesday at 5:15pm, location to be announced.<br> |
+ | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17006450 Link to abstract]<br> | ||
+ | [http://www.nature.com/nature/journal/v443/n7111/pdf/443517b.pdf Link to paper] |
Latest revision as of 16:27, 10 April 2007
Contents |
iGEM 2007
11 April 2007
Deepa to present Imperial iGEM presentation Link to Imperial wiki
Archive
25 July
Annie to present article titled "Synthetic protein-protein interatction domains created by shuffling Cys2His2 zinc-fingers".
Link to Article
18 July
Jason to present on Article titled Environmentally Controlled Invasion of Cancer
Cells by Engineered Bacteria.
11 July
Brendan to present on Article titled Ultrasensitivity and Nosie Propagation in a Synthetic Transcriptional Cascade.
5 July
Peter presents an article about transcriptional regulators used to form an oscillator. The article is here
20 June
Hayato presents an article on producing the luciferace-magnetic particle complex.
6pm Walter Hall
16 May
This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm
9 May
Journal Club is in Walter Hall, 80 Waterman
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods
Matthias Seydack
2 May
Sri Kosuri from MIT to come and talk about his paper from the previous week.
25 April
John to present, + overview of Biobricks
Refactoring bacteriophage T7 Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2
18 April
Kara and Jesse
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html
Programmable ligand-controlled riboregulators of eukaryotic gene expression.
Bayer TS, Smolke CD.
11 April
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).
4 April
Brendan and Peter will be presenting the article entitled "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids".
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html
21 March
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli"
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) Download the paper here
14th March
John to give overview of last year's competition and to hand out readings Download paper here
November 29, 2006
Hayato will be presenting a paper on DNA autorepair. Wednesday at 5:15pm, location to be announced.
Link to abstract
Link to paper