Brown:Journal club:Synthetic biology journal club

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=='''iGEM 2007'''==
 +
==11 April 2007==
 +
Deepa to present Imperial iGEM presentation
 +
[http://openwetware.org/wiki/IGEM:IMPERIAL/2006 Link to Imperial wiki]
 +
=='''Archive'''==
 +
==25 July==
 +
Annie to present article titled "Synthetic protein-protein interatction domains created by shuffling Cys2His2 zinc-fingers".<br>
 +
[http://www.nature.com/msb/journal/v2/n1/full/msb4100053.html Link to Article]
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==Tuesday nights, 6-7pm==  
+
==18 July==
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Location: [https://techhouse.org/drupal/directions | Technology House Lounge], Brown campus, please call 401-5238190 if you are unable to enter the building.
+
 +
Jason to present on Article titled ''Environmentally Controlled Invasion of Cancer
 +
Cells by Engineered Bacteria''. <br>
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==[[Brown:Journal club/4.04.06|4th April]]==
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[http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6WK7-4HJRXGD-4-3&_cdi=6899&_user=489286&_orig=search&_coverDate=01%2F27%2F2006&_qd=1&_sk=996449995&view=c&wchp=dGLbVzb-zSkWA&md5=d973cfd361022b29e92d1ccc48c28b92&ie=/sdarticle.pdf PDF of Article]
 +
 
 +
 
 +
==11 July==
 +
Brendan to present on Article titled ''Ultrasensitivity and Nosie Propagation in a Synthetic Transcriptional Cascade''. <br>
 +
 
 +
[http://www.pnas.org/cgi/reprint/102/10/3581 PDF of Article]
 +
 
 +
==5 July==
 +
Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]
 +
 
 +
==20 June==
 +
Hayato presents an article on producing the luciferace-magnetic particle complex.
 +
 
 +
6pm Walter Hall
 +
 
 +
==16 May==
 +
This is the last journal club until the summer.  This week will be a meeting to discuss the lab and the first few weeks of the summer.  In Walter Hall, 80 Waterman, 6-7pm
 +
 
 +
==9 May==
 +
 
 +
Journal Club is in Walter Hall, 80 Waterman
 +
 
 +
Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods
 +
 
 +
Matthias Seydack
 +
 
 +
==2 May==
 +
 
 +
[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.
 +
 
 +
==25 April==
 +
 
 +
John to present, + overview of Biobricks
 +
 
 +
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7]
 +
Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2
 +
 
 +
==18 April==
 +
 
 +
Kara and Jesse
 +
 
 +
http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html
 +
 
 +
Programmable ligand-controlled riboregulators of eukaryotic gene expression.
 +
 
 +
Bayer TS, Smolke CD.
 +
 
 +
==11 April==
 +
Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".
 +
 
 +
The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299
 +
 
 +
Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).
 +
 
 +
==4 April==
Brendan and Peter will be presenting the article entitled "Engineering a
Brendan and Peter will be presenting the article entitled "Engineering a
mevalonate pathway in Escherichia coli for production of terpenoids".
mevalonate pathway in Escherichia coli for production of terpenoids".
-
<Br>
+
 
-
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. Nature Biotechnology  21, 796 - 802 (2003).
+
Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a
 +
mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology  21, 796 - 802 (2003).
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html
It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html
<Br>
<Br>
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==[[Brown:Journal club/3.21.06|21st March]]==
+
==21 March==
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br>
Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli" <br>
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]
Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]
-
==Archive==
 
==14th March==
==14th March==
John to give overview of last year's competition and to hand out readings
John to give overview of last year's competition and to hand out readings
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]
[http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]
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+
==November 29, 2006==
-
==please add future weeks==
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Hayato will be presenting a paper on DNA autorepair. Wednesday at 5:15pm, location to be announced.<br>
 +
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17006450 Link to abstract]<br>
 +
[http://www.nature.com/nature/journal/v443/n7111/pdf/443517b.pdf Link to paper]

Latest revision as of 16:27, 10 April 2007

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Contents

iGEM 2007

11 April 2007

Deepa to present Imperial iGEM presentation [http://openwetware.org/wiki/IGEM:IMPERIAL/2006 Link to Imperial wiki]

Archive

25 July

Annie to present article titled "Synthetic protein-protein interatction domains created by shuffling Cys2His2 zinc-fingers".
[http://www.nature.com/msb/journal/v2/n1/full/msb4100053.html Link to Article]

18 July

Jason to present on Article titled Environmentally Controlled Invasion of Cancer Cells by Engineered Bacteria.

[http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6WK7-4HJRXGD-4-3&_cdi=6899&_user=489286&_orig=search&_coverDate=01%2F27%2F2006&_qd=1&_sk=996449995&view=c&wchp=dGLbVzb-zSkWA&md5=d973cfd361022b29e92d1ccc48c28b92&ie=/sdarticle.pdf PDF of Article]


11 July

Brendan to present on Article titled Ultrasensitivity and Nosie Propagation in a Synthetic Transcriptional Cascade.

[http://www.pnas.org/cgi/reprint/102/10/3581 PDF of Article]

5 July

Peter presents an article about transcriptional regulators used to form an oscillator. The article is [http://sas.epnet.com/externalframe.asp?tb=0&_ug=sid+22B5129D%2D5B8E%2D4F95%2D8DF7%2D47E076627D12%40sessionmgr6+812C&_us=SLsrc+ext+or+Date+034D&_usmtl=ftv+True+137E&_uso=hd+False+db%5B0+%2Daph+1BEE&fi=aph_2752232_AN&lpdf=true&pdfs=&tn=&tp=PC&es=cs%5Fclient%2Easp%3FT%3DP%26P%3DAN%26K%3D2752232%26rn%3D1%26db%3Daph%26is%3D0028%2D0836%26sc%3D%26S%3D%26D%3Daph%26title%3DNature%26year%3D2000%26bk%3DS&fn=1&rn=1&bk=S&EBSCOContent=ZWJjY8bb43ePprRruevra6Gmr4GPprOFoaa5fKaWxpjDpfG60uGtuNDf7XnU3u6+4wAA&an=2752232&db=aph& here]

20 June

Hayato presents an article on producing the luciferace-magnetic particle complex.

6pm Walter Hall

16 May

This is the last journal club until the summer. This week will be a meeting to discuss the lab and the first few weeks of the summer. In Walter Hall, 80 Waterman, 6-7pm

9 May

Journal Club is in Walter Hall, 80 Waterman

Hiyato to present: Nanoparticle labels in immunosensing using optical detection methods

Matthias Seydack

2 May

[http://openwetware.org/wiki/Sriram_Kosuri Sri Kosuri] from MIT to come and talk about his paper from the previous week.

25 April

John to present, + overview of Biobricks

[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html Refactoring bacteriophage T7] Leon Y Chan1,a, Sriram Kosuri2,a and Drew Endy2

18 April

Kara and Jesse

http://www.nature.com/nbt/journal/v23/n3/abs/nbt1069.html

Programmable ligand-controlled riboregulators of eukaryotic gene expression.

Bayer TS, Smolke CD.

11 April

Annie and Angela will present the article: "Design of artificial cell–cell communication using gene and metabolic networks".

The paper can be found at: http://www.pnas.org/cgi/content/short/101/8/2299

Thomas Bulter, Sun-Gu Lee, Wilson WaiChun Wong, Eileen Fung, Michael R. Conner, and James C. Liao. 2004. Design of artificial cell-cell communication using gene and metabolic networks. PNAS. 101(8): 2299-2304. (Quorum sensor using acetate signal).

4 April

Brendan and Peter will be presenting the article entitled "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids".

Vincent J J Martin, Douglas J Pitera1, Sydnor T Withers1, Jack D Newman & Jay D Keasling. "Engineering a mevalonate pathway in Escherichia coli for production of terpenoids." Nature Biotechnology 21, 796 - 802 (2003).

It can be found online at http://www.nature.com/nbt/journal/v21/n7/abs/nbt833.html

21 March

Megan and Victoria will present the article handed out in last meeting. Article is entitled: "Construction of a genetic toggle switch in Escherichia coli"

Timothy S. Gardner, Charles R. Cantor, and James J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. Vol. 403. 339 - 342. (Bistable gene regulatory network, toggled by transient chemical or thermal induction, to serve as cellular memory) [http://www.nature.com/nature/journal/v403/n6767/abs/403339a0.html Download the paper here]

14th March

John to give overview of last year's competition and to hand out readings [http://www.nature.com/nature/journal/v438/n7067/abs/nature04405.html Download paper here]

November 29, 2006

Hayato will be presenting a paper on DNA autorepair. Wednesday at 5:15pm, location to be announced.
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=17006450 Link to abstract]
[http://www.nature.com/nature/journal/v443/n7111/pdf/443517b.pdf Link to paper]

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